Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L2Z13_RS09015 Genome accession   NZ_CP091361
Coordinates   1852948..1853430 (-) Length   160 a.a.
NCBI ID   WP_029424121.1    Uniprot ID   A0AAX0TXI4
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847948..1858430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS08980 (L2Z13_08980) - 1848058..1849089 (+) 1032 WP_029424123.1 lipase secretion chaperone -
  L2Z13_RS08985 (L2Z13_08985) - 1849204..1850145 (+) 942 WP_086221420.1 triacylglycerol lipase -
  L2Z13_RS08990 (L2Z13_08990) rplS 1850198..1850566 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z13_RS08995 (L2Z13_08995) trmD 1850774..1851514 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z13_RS09000 (L2Z13_09000) rimM 1851560..1852108 (-) 549 WP_005130741.1 ribosome maturation factor RimM -
  L2Z13_RS09005 (L2Z13_09005) rpsP 1852128..1852379 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z13_RS09010 (L2Z13_09010) pilE 1852526..1852951 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  L2Z13_RS09015 (L2Z13_09015) pilY2 1852948..1853430 (-) 483 WP_029424121.1 type IV pilin protein Machinery gene
  L2Z13_RS09020 (L2Z13_09020) pilY1 1853443..1857297 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z13_RS09025 (L2Z13_09025) pilX 1857309..1858127 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17630.92 Da        Isoelectric Point: 8.8351

>NTDB_id=650349 L2Z13_RS09015 WP_029424121.1 1852948..1853430(-) (pilY2) [Acinetobacter baumannii strain AB177-VUB]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIVIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=650349 L2Z13_RS09015 WP_029424121.1 1852948..1853430(-) (pilY2) [Acinetobacter baumannii strain AB177-VUB]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGTTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.953

100

0.419