Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG959_RS26110 Genome accession   NZ_CP107951
Coordinates   5837018..5837701 (+) Length   227 a.a.
NCBI ID   WP_326662248.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5832018..5842701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS26080 (OG959_26090) - 5832243..5833409 (-) 1167 WP_326662243.1 acyltransferase family protein -
  OG959_RS26085 (OG959_26095) - 5833900..5834094 (+) 195 WP_326662244.1 hypothetical protein -
  OG959_RS26100 (OG959_26110) tig 5834673..5836067 (+) 1395 WP_326662246.1 trigger factor -
  OG959_RS26105 (OG959_26115) - 5836333..5836938 (+) 606 WP_326666613.1 ATP-dependent Clp protease proteolytic subunit -
  OG959_RS26110 (OG959_26120) clpP 5837018..5837701 (+) 684 WP_326662248.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG959_RS26115 (OG959_26125) clpX 5837859..5839157 (+) 1299 WP_326662250.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG959_RS26120 (OG959_26130) - 5839232..5840230 (-) 999 WP_326662252.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24738.09 Da        Isoelectric Point: 4.6747

>NTDB_id=650108 OG959_RS26110 WP_326662248.1 5837018..5837701(+) (clpP) [Streptomyces sp. NBC_00385]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVSTRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=650108 OG959_RS26110 WP_326662248.1 5837018..5837701(+) (clpP) [Streptomyces sp. NBC_00385]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCGTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGTGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTGCTGCTGGCCGCCGGCACAC
CGGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTCCTGATCCACCAGCCGTCGTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGAGCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGTGACGACATCGAGCGCGACAAGATCCTGACCGCCGATGACGCCCTCGCCTACGGCCTGGTCGACC
AGATCGTCTCGACCCGTAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

83.26

0.396
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pneumoniae Rx1

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pneumoniae R6

44.503

84.141

0.374
  clpP Streptococcus pneumoniae TIGR4

44.503

84.141

0.374
  clpP Streptococcus pneumoniae D39

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37