Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG917_RS11540 Genome accession   NZ_CP107948
Coordinates   2534129..2534746 (-) Length   205 a.a.
NCBI ID   WP_328317483.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529129..2539746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS11525 (OG917_11530) - 2530836..2531864 (+) 1029 WP_328317480.1 hypothetical protein -
  OG917_RS11530 (OG917_11535) clpX 2531945..2533237 (-) 1293 WP_328317481.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG917_RS11535 (OG917_11540) clpP 2533394..2534077 (-) 684 WP_328317482.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG917_RS11540 (OG917_11545) clpP 2534129..2534746 (-) 618 WP_328317483.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG917_RS11545 (OG917_11550) tig 2535024..2536406 (-) 1383 WP_328317484.1 trigger factor -
  OG917_RS11560 (OG917_11565) - 2537108..2537302 (-) 195 WP_328317485.1 hypothetical protein -
  OG917_RS11565 (OG917_11570) - 2537801..2538982 (+) 1182 WP_328317486.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21634.56 Da        Isoelectric Point: 4.5581

>NTDB_id=649924 OG917_RS11540 WP_328317483.1 2534129..2534746(-) (clpP) [Streptomyces sp. NBC_00388]
MTNLMPYAAGEPNIGGGLGDQVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAADPEKDIFLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGLAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAQQLLRTKKRMAEITARHSG
QTVEAIIRDGDRDRWYTAEEAKEYGLIDEIISSASGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=649924 OG917_RS11540 WP_328317483.1 2534129..2534746(-) (clpP) [Streptomyces sp. NBC_00388]
GTGACGAATCTGATGCCCTACGCCGCCGGCGAGCCCAACATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCT
CGGTGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCGCAGCTGCTCCTCCTTG
CAGCCGACCCGGAAAAGGACATCTTCCTTTACATCAACAGCCCCGGCGGCTCGGTGACGGCAGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGTATGGGCCTCGCGGCCTCGATGGGGCAGTTCCTGCTGACCGG
CGGCACCGCGGGCAAGCGCTTCGCGCTCCCCAACACCGACATCCTGATGCACCAGGGCTCGGCCGGTCTCGGCGGCACAG
CGTCGGACATCAAGATCCAGGCCCAGCAGCTGCTGCGCACGAAGAAGCGCATGGCGGAGATCACCGCCCGGCACTCCGGC
CAGACCGTCGAAGCGATCATCCGCGACGGTGACCGCGACCGCTGGTACACGGCGGAAGAGGCCAAGGAGTACGGCCTCAT
CGACGAGATCATCTCCTCCGCGTCGGGCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.88

93.171

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.521

93.659

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

52.542

86.341

0.454
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.977

86.341

0.449
  clpP Streptococcus mutans UA159

52

85.366

0.444
  clpP Streptococcus pneumoniae TIGR4

49.153

86.341

0.424
  clpP Streptococcus pneumoniae Rx1

49.153

86.341

0.424
  clpP Streptococcus pneumoniae D39

49.153

86.341

0.424
  clpP Streptococcus pneumoniae R6

49.153

86.341

0.424
  clpP Streptococcus thermophilus LMG 18311

49.714

85.366

0.424
  clpP Streptococcus thermophilus LMD-9

49.714

85.366

0.424
  clpP Streptococcus pyogenes JRS4

49.714

85.366

0.424
  clpP Streptococcus pyogenes MGAS315

49.714

85.366

0.424