Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS82_RS27610 Genome accession   NZ_CP107928
Coordinates   6314654..6315262 (+) Length   202 a.a.
NCBI ID   WP_057574659.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6309654..6320262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS27580 (OHS82_27585) - 6309952..6310428 (+) 477 WP_057574655.1 HD domain-containing protein -
  OHS82_RS27585 (OHS82_27590) - 6310477..6311727 (-) 1251 WP_328434736.1 acyltransferase family protein -
  OHS82_RS27590 (OHS82_27595) - 6312138..6312332 (+) 195 WP_057574657.1 hypothetical protein -
  OHS82_RS27605 (OHS82_27610) tig 6312944..6314335 (+) 1392 WP_057574658.1 trigger factor -
  OHS82_RS27610 (OHS82_27615) clpP 6314654..6315262 (+) 609 WP_057574659.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS82_RS27615 (OHS82_27620) clpP 6315496..6316176 (+) 681 WP_057574660.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS82_RS27620 (OHS82_27625) clpX 6316359..6317648 (+) 1290 WP_057574661.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS82_RS27625 (OHS82_27630) - 6317734..6318747 (-) 1014 WP_057574662.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21299.18 Da        Isoelectric Point: 4.6747

>NTDB_id=649560 OHS82_RS27610 WP_057574659.1 6314654..6315262(+) (clpP) [Streptomyces sp. NBC_00425]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QVTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=649560 OHS82_RS27610 WP_057574659.1 6314654..6315262(+) (clpP) [Streptomyces sp. NBC_00425]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTATACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGTTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCCATCACGGCCGGTATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTGGCCGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCCGGGTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCGCAGCACACCGGCCAGACGGTCGAG
CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

84.653

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.089

0.485
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.973

91.584

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.089

0.48
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMD-9

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446