Detailed information NTG0649562

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHS82_RS27620
• Genome accession: NZ_CP107928
• Coordinates: 6316359..6317648 (+)
• Length: 429 a.a.
• NCBI ID: WP_057574661.1
• Uniprot ID: A0ABU0Q0F4
• Organism: Streptomyces sp. NBC_00425
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6311359..6322648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHS82_RS27590 (OHS82_27595)	-	6312138..6312332 (+)	195	WP_057574657.1	hypothetical protein	-
OHS82_RS27605 (OHS82_27610)	tig	6312944..6314335 (+)	1392	WP_057574658.1	trigger factor	-
OHS82_RS27610 (OHS82_27615)	clpP	6314654..6315262 (+)	609	WP_057574659.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHS82_RS27615 (OHS82_27620)	clpP	6315496..6316176 (+)	681	WP_057574660.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHS82_RS27620 (OHS82_27625)	clpX	6316359..6317648 (+)	1290	WP_057574661.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHS82_RS27625 (OHS82_27630)	-	6317734..6318747 (-)	1014	WP_057574662.1	hypothetical protein	-
OHS82_RS27630 (OHS82_27635)	-	6318884..6321535 (+)	2652	WP_057574663.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46878.74 Da
• Isoelectric Point: 4.7788

>NTDB_id=649562 OHS82_RS27620 WP_057574661.1 6316359..6317648(+) (clpX) [Streptomyces sp. NBC_00425]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGQGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIETRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGGRGPGEQKTA

Nucleotide

• Length: 1290 bp

>NTDB_id=649562 OHS82_RS27620 WP_057574661.1 6316359..6317648(+) (clpX) [Streptomyces sp. NBC_00425]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTGGGCCAGGAGCCC
GCGAAGAAGGCCCTGTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGCCAAGGCCG
TGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACCGGCTCGGGCAAGACGCTCCTCGCGCAGA
CCCTCGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACCGAGGCGGGATACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGCAAGAGTGAAAACCCCTCCATCACGCGCGACGTGTCAGGCGAGGGCGTGCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCGGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACCACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCGGGCCTGGAGAAGATCATCGAGACCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGTCTGCCCGTGATCACCTCGGTCCACAACCTGGACCGT
GAGGCGCTCCTGCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGGCTCTTCGAACTGGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCAGACGGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGCGGTCATGTACGAGGTGCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTCGTCCTCTCCAACGTCAACCCGACCCTGATCCCGCGGGACGCCCGCGGCGGCCGCGGCCCGGGCGAGCAGAA
GACCGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.706	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	95.804	0.522