Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG389_RS12910 Genome accession   NZ_CP107924
Coordinates   2805017..2805688 (-) Length   223 a.a.
NCBI ID   WP_328298620.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2800017..2810688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS12900 (OG389_12915) - 2802464..2803441 (+) 978 WP_328298619.1 hypothetical protein -
  OG389_RS12905 (OG389_12920) clpX 2803577..2804863 (-) 1287 WP_250739478.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG389_RS12910 (OG389_12925) clpP 2805017..2805688 (-) 672 WP_328298620.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG389_RS12915 (OG389_12930) - 2805775..2806392 (-) 618 WP_254383059.1 ATP-dependent Clp protease proteolytic subunit -
  OG389_RS12920 (OG389_12935) tig 2806690..2808093 (-) 1404 WP_328298621.1 trigger factor -
  OG389_RS12935 (OG389_12950) - 2808754..2809917 (-) 1164 WP_328298622.1 tyrosine-type recombinase/integrase -
  OG389_RS12940 (OG389_12955) - 2809917..2810120 (-) 204 WP_328298623.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24465.89 Da        Isoelectric Point: 4.6524

>NTDB_id=649452 OG389_RS12910 WP_328298620.1 2805017..2805688(-) (clpP) [Streptomyces sp. NBC_00435]
MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD
PDRDIYLYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAANEILRMRDQLENMLALHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=649452 OG389_RS12910 WP_328298620.1 2805017..2805688(-) (clpP) [Streptomyces sp. NBC_00435]
ATGGTGAACACCCAGATGCACATGAACAACCTTTCTCCCGCGAGCGGCCTCTACACCGGCGCGCCGGTGGACAACCGTTA
CGTCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTACCTGTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCGCCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGAACATGCTGGCCCTGCACTCCTCGACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCCAGGACGCGCTGGCGTACGGCCTGATCGACC
AGGTCGTCGCCACCCGCAAGACTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.91

84.753

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.128

84.305

0.439
  clpP Streptococcus pneumoniae D39

47.644

85.65

0.408
  clpP Streptococcus pneumoniae R6

47.644

85.65

0.408
  clpP Streptococcus pneumoniae TIGR4

47.644

85.65

0.408
  clpP Streptococcus pneumoniae Rx1

47.644

85.65

0.408
  clpP Streptococcus thermophilus LMD-9

46.392

86.996

0.404
  clpP Streptococcus thermophilus LMG 18311

46.392

86.996

0.404
  clpP Streptococcus mutans UA159

47.368

85.202

0.404
  clpP Streptococcus pyogenes JRS4

46.316

85.202

0.395
  clpP Streptococcus pyogenes MGAS315

46.316

85.202

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386