Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB13_RS11190 Genome accession   NZ_CP107921
Coordinates   2517946..2518629 (-) Length   227 a.a.
NCBI ID   WP_164261167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512946..2523629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS11180 (OHB13_11190) - 2515339..2516376 (+) 1038 WP_266857027.1 hypothetical protein -
  OHB13_RS11185 (OHB13_11195) clpX 2516497..2517789 (-) 1293 WP_266857025.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB13_RS11190 (OHB13_11200) clpP 2517946..2518629 (-) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB13_RS11195 (OHB13_11205) clpP 2518682..2519299 (-) 618 WP_323183829.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB13_RS11200 (OHB13_11210) tig 2519582..2520985 (-) 1404 WP_328376948.1 trigger factor -
  OHB13_RS11215 (OHB13_11225) - 2521591..2521785 (-) 195 WP_164261160.1 hypothetical protein -
  OHB13_RS11220 (OHB13_11230) - 2522284..2523471 (+) 1188 WP_328376949.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24885.28 Da        Isoelectric Point: 4.5097

>NTDB_id=649378 OHB13_RS11190 WP_164261167.1 2517946..2518629(-) (clpP) [Streptomyces sp. NBC_00440]
MVNTSMNDYSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPVEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMTT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=649378 OHB13_RS11190 WP_164261167.1 2517946..2518629(-) (clpP) [Streptomyces sp. NBC_00440]
ATGGTGAACACCAGCATGAACGACTACTCCGCCTCCGCCAGCGGCCTCTACACCGGTCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACCGCGATCTACGACACCATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCTTGCTGGCGGCCGGCACCCCCG
GAAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGTATGCGGACCCAGTTGGAAGACCTGCTGGCCAAGCACTCGACGACGCCGGT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGCCTGGTCGACCAGA
TCGTTTCGACCCGTAAGGGCTCCGTGGGAATGATGACCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37