Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG432_RS22880 Genome accession   NZ_CP107918
Coordinates   5127144..5127833 (+) Length   229 a.a.
NCBI ID   WP_328315206.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5122144..5132833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS22850 (OG432_22850) - 5123434..5123628 (+) 195 WP_267053209.1 hypothetical protein -
  OG432_RS22855 (OG432_22855) - 5123835..5124140 (+) 306 WP_328312818.1 hypothetical protein -
  OG432_RS22870 (OG432_22870) tig 5124847..5126235 (+) 1389 WP_328312819.1 trigger factor -
  OG432_RS22875 (OG432_22875) - 5126489..5127097 (+) 609 WP_100579696.1 ATP-dependent Clp protease proteolytic subunit -
  OG432_RS22880 (OG432_22880) clpP 5127144..5127833 (+) 690 WP_328315206.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG432_RS22885 (OG432_22885) clpX 5128010..5129302 (+) 1293 WP_100579698.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG432_RS22890 (OG432_22890) - 5129380..5130363 (-) 984 WP_328312820.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24901.31 Da        Isoelectric Point: 4.5793

>NTDB_id=649265 OG432_RS22880 WP_328315206.1 5127144..5127833(+) (clpP) [Streptomyces sp. NBC_00442]
MVNTPMSNFSGLPANASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQ
LSDLEIAANEIIRMRAQLEDMLAKHSTTPIEKIRDDIERDKILTAEDALSYGLVDQIVSTRKTTTSAAA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=649265 OG432_RS22880 WP_328315206.1 5127144..5127833(+) (clpP) [Streptomyces sp. NBC_00442]
ATGGTGAACACCCCCATGAGCAACTTCTCCGGCCTCCCGGCCAACGCGAGCGGCCTCTACACCGGTCCGCAGGTCGACAA
CCGCTACATCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGG
AGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTGATGGCGCAGCTCCTGTGCCTGGAGTCG
ATGGACCCGGACCGCGACATCTCCATCTACATCAACAGCCCGGGTGGTTCCTTCACCGCCCTCACGGCGATCTACGACAC
GATGCAGTTCGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCG
GCACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCCTCGGGCGGCACCGGCCGCGAGCAG
CTCTCCGACCTGGAGATCGCGGCCAACGAGATCATCCGGATGCGCGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGAC
GACGCCGATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCCTACGGCCTGG
TGGACCAGATCGTCTCCACCCGCAAGACGACGACCTCCGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

82.969

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

82.533

0.402
  clpP Streptococcus thermophilus LMD-9

44.845

84.716

0.38
  clpP Streptococcus thermophilus LMG 18311

44.845

84.716

0.38
  clpP Streptococcus pyogenes JRS4

44.33

84.716

0.376
  clpP Streptococcus pyogenes MGAS315

44.33

84.716

0.376
  clpP Streptococcus mutans UA159

45.263

82.969

0.376
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

83.406

0.376
  clpP Streptococcus pneumoniae R6

44.271

83.843

0.371
  clpP Streptococcus pneumoniae TIGR4

44.271

83.843

0.371
  clpP Streptococcus pneumoniae D39

44.271

83.843

0.371
  clpP Streptococcus pneumoniae Rx1

44.271

83.843

0.371
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

83.406

0.367