NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHU74_RS11975	Genome accession	NZ_CP107907
Coordinates	2578445..2579116 (-)	Length	223 a.a.
NCBI ID	WP_371615876.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00454
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2573445..2584116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU74_RS11960 (OHU74_11955)	-	2575540..2576499 (+)	960	WP_371615874.1	hypothetical protein	-
OHU74_RS11965 (OHU74_11960)	-	2576545..2576820 (-)	276	WP_371615875.1	hypothetical protein	-
OHU74_RS11970 (OHU74_11965)	clpX	2577005..2578291 (-)	1287	WP_250739478.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU74_RS11975 (OHU74_11970)	clpP	2578445..2579116 (-)	672	WP_371615876.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU74_RS11980 (OHU74_11975)	-	2579199..2579816 (-)	618	WP_250739480.1	ATP-dependent Clp protease proteolytic subunit	-
OHU74_RS11985 (OHU74_11980)	tig	2580114..2581517 (-)	1404	WP_371615877.1	trigger factor	-
OHU74_RS12000 (OHU74_11995)	-	2582154..2582399 (+)	246	WP_371615878.1	hypothetical protein	-
OHU74_RS12005 (OHU74_12000)	-	2582458..2582652 (-)	195	WP_330296402.1	hypothetical protein	-
OHU74_RS12010 (OHU74_12005)	-	2582783..2583268 (-)	486	WP_371615879.1	HD domain-containing protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24467.87 Da Isoelectric Point: 4.6524

                                >NTDB_id=648686 OHU74_RS11975 WP_371615876.1 2578445..2579116(-) (clpP) [Streptomyces sp. NBC_00454]

MVNTQMHMNNLSPASGLYTGAPVDNRYVIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD

PDRDIYLYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAANEILRMRDQLENMLATHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide

Download Length: 672 bp

                                >NTDB_id=648686 OHU74_RS11975 WP_371615876.1 2578445..2579116(-) (clpP) [Streptomyces sp. NBC_00454]

ATGGTGAACACCCAGATGCACATGAACAATCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCACCGGTGGACAACCGCTA

CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA

TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTACCTGTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCGGCGCCC

CCGGCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCCTCGGGCGGCACCGGCCGCGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTCGAGAACATGCTGGCCACGCACTCCTCGACGCC

GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCTCAGGACGCGCTGGCGTACGGCCTGATCGACC

AGGTCGTGGCCACCCGCAAGACTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.439	84.753	0.453
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.66	84.305	0.444
clpP	Streptococcus pneumoniae D39	48.168	85.65	0.413
clpP	Streptococcus pneumoniae R6	48.168	85.65	0.413
clpP	Streptococcus pneumoniae TIGR4	48.168	85.65	0.413
clpP	Streptococcus pneumoniae Rx1	48.168	85.65	0.413
clpP	Streptococcus mutans UA159	47.895	85.202	0.408
clpP	Streptococcus thermophilus LMG 18311	46.907	86.996	0.408
clpP	Streptococcus thermophilus LMD-9	46.907	86.996	0.408
clpP	Streptococcus pyogenes JRS4	46.842	85.202	0.399
clpP	Streptococcus pyogenes MGAS315	46.842	85.202	0.399
clpP	Lactococcus lactis subsp. cremoris KW2	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	85.65	0.381

Detailed information NTG0648686