Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OHU74_RS11970 Genome accession   NZ_CP107907
Coordinates   2577005..2578291 (-) Length   428 a.a.
NCBI ID   WP_250739478.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2572005..2583291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS11950 (OHU74_11945) - 2572132..2572701 (+) 570 WP_371615872.1 vitamin K epoxide reductase family protein -
  OHU74_RS11955 (OHU74_11950) - 2572791..2575412 (-) 2622 WP_371615873.1 valine--tRNA ligase -
  OHU74_RS11960 (OHU74_11955) - 2575540..2576499 (+) 960 WP_371615874.1 hypothetical protein -
  OHU74_RS11965 (OHU74_11960) - 2576545..2576820 (-) 276 WP_371615875.1 hypothetical protein -
  OHU74_RS11970 (OHU74_11965) clpX 2577005..2578291 (-) 1287 WP_250739478.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU74_RS11975 (OHU74_11970) clpP 2578445..2579116 (-) 672 WP_371615876.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU74_RS11980 (OHU74_11975) - 2579199..2579816 (-) 618 WP_250739480.1 ATP-dependent Clp protease proteolytic subunit -
  OHU74_RS11985 (OHU74_11980) tig 2580114..2581517 (-) 1404 WP_371615877.1 trigger factor -
  OHU74_RS12000 (OHU74_11995) - 2582154..2582399 (+) 246 WP_371615878.1 hypothetical protein -
  OHU74_RS12005 (OHU74_12000) - 2582458..2582652 (-) 195 WP_330296402.1 hypothetical protein -
  OHU74_RS12010 (OHU74_12005) - 2582783..2583268 (-) 486 WP_371615879.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 46950.82 Da        Isoelectric Point: 4.8219

>NTDB_id=648685 OHU74_RS11970 WP_250739478.1 2577005..2578291(-) (clpX) [Streptomyces sp. NBC_00454]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGTGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLERIIESRAGAKGIGFGATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=648685 OHU74_RS11970 WP_250739478.1 2577005..2578291(-) (clpX) [Streptomyces sp. NBC_00454]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGCTGGGAAGAGCTTCCCAAGCCGCGGGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTAGCGGTGTACAACCACTACAAGCGCGTCCAGGCAGGCGAGAACGGCGGCGGGACGGGCCG
CGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGTCCCACGGGCTCCGGCAAGACCCTCCTCGCGCAGA
CCCTCGCCCGGATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCTGACTACGACGTCAAGAAGGCCGAAACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAAGGCACGACCGCTTCCGTACCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGAGCCTTCTCCGGCCTGGAGCGGATCATCGAGTCCCGCGCCGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAGGCCATCGCCGACCAGGCGATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGTAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCCCGGATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(115-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.682

93.925

0.598
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.015

96.028

0.519