Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHN74_RS13950 Genome accession   NZ_CP107903
Coordinates   3218969..3219667 (-) Length   232 a.a.
NCBI ID   WP_055534822.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3213969..3224667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS13940 (OHN74_13950) - 3216448..3217404 (+) 957 WP_327694889.1 hypothetical protein -
  OHN74_RS13945 (OHN74_13955) clpX 3217499..3218785 (-) 1287 WP_327694890.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHN74_RS13950 (OHN74_13960) clpP 3218969..3219667 (-) 699 WP_055534822.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHN74_RS13955 (OHN74_13965) clpP 3219717..3220325 (-) 609 WP_189149023.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHN74_RS13960 (OHN74_13970) tig 3220779..3222191 (-) 1413 WP_327694891.1 trigger factor -
  OHN74_RS13975 (OHN74_13985) - 3222788..3222982 (-) 195 WP_006383514.1 hypothetical protein -
  OHN74_RS13980 (OHN74_13990) - 3223187..3223660 (-) 474 WP_327694892.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25565.01 Da        Isoelectric Point: 4.7178

>NTDB_id=648489 OHN74_RS13950 WP_055534822.1 3218969..3219667(-) (clpP) [Streptomyces sp. NBC_00459]
MNDFPGSGLYDRTRAAQAAQAQYTGPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLC
LESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETG
RGQVSDLEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=648489 OHN74_RS13950 WP_055534822.1 3218969..3219667(-) (clpP) [Streptomyces sp. NBC_00459]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGACCGTACGAGGGCGGCCCAGGCCGCTCAGGCCCAGTACACCGGTCCCGC
CGCCGAATCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGC
TCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGATGCCTCCGCCAACGACGTCATGGCACAGCTGCTGTGC
CTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCTCTCACGGCCAT
TTACGACACGATGCAGTTCGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTCC
TCGCGGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGT
CGCGGGCAGGTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTGCTCAGCTGGAGGACATGCTGGCCAG
GCACTCCACCACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGT
ACGGCCTGATCGATCAGATCATTTCCACTCGGAAAATGAACAACGCCAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(43-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

81.897

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

81.034

0.405
  clpP Streptococcus mutans UA159

45.729

85.776

0.392
  clpP Streptococcus thermophilus LMD-9

46.667

84.052

0.392
  clpP Streptococcus thermophilus LMG 18311

46.667

84.052

0.392
  clpP Streptococcus pyogenes JRS4

45.641

84.052

0.384
  clpP Streptococcus pyogenes MGAS315

45.641

84.052

0.384
  clpP Streptococcus pneumoniae TIGR4

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

84.483

0.379
  clpP Streptococcus pneumoniae Rx1

44.898

84.483

0.379
  clpP Streptococcus pneumoniae D39

44.898

84.483

0.379
  clpP Streptococcus pneumoniae R6

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

84.483

0.371