Detailed information NTG0648488

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHN74_RS13945
• Genome accession: NZ_CP107903
• Coordinates: 3217499..3218785 (-)
• Length: 428 a.a.
• NCBI ID: WP_327694890.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00459
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3212499..3223785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHN74_RS13935 (OHN74_13945)	-	3213687..3216311 (-)	2625	WP_327694888.1	valine--tRNA ligase	-
OHN74_RS13940 (OHN74_13950)	-	3216448..3217404 (+)	957	WP_327694889.1	hypothetical protein	-
OHN74_RS13945 (OHN74_13955)	clpX	3217499..3218785 (-)	1287	WP_327694890.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHN74_RS13950 (OHN74_13960)	clpP	3218969..3219667 (-)	699	WP_055534822.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHN74_RS13955 (OHN74_13965)	clpP	3219717..3220325 (-)	609	WP_189149023.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHN74_RS13960 (OHN74_13970)	tig	3220779..3222191 (-)	1413	WP_327694891.1	trigger factor	-
OHN74_RS13975 (OHN74_13985)	-	3222788..3222982 (-)	195	WP_006383514.1	hypothetical protein	-
OHN74_RS13980 (OHN74_13990)	-	3223187..3223660 (-)	474	WP_327694892.1	HD domain-containing protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46937.85 Da
• Isoelectric Point: 4.8346

>NTDB_id=648488 OHN74_RS13945 WP_327694890.1 3217499..3218785(-) (clpX) [Streptomyces sp. NBC_00459]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSAGQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLVESRAGAKGIGFGATIRSKKELEAKDRFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
VDVVLKNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=648488 OHN74_RS13945 WP_327694890.1 3217499..3218785(-) (clpX) [Streptomyces sp. NBC_00459]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTCAGGTGGGAGGAACTCCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAGGGGTACGTAGTCGGTCAGGAGTCG
GCCAAGAAGGCCCTGTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACAGCGCCGGGCAGAACCG
TGACGACGCCATCGAGTTGGCCAAGTCGAACATCCTTCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCGCAGA
CCCTGGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGGTATGTCGGCGAGGAC
GTCGAGAACATCCTGTTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAAACCGGAATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGTAAGAGTGAAAACCCGTCGATCACGCGTGACGTGTCCGGCGAGGGCGTCCAGCAGGCAC
TGCTGAAGATCCTCGAAGGCACGACGGCCTCCGTCCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGCTCGTCGAGTCCCGTGCGGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGAAGGAGCTGGAGGCGAAGGACCGCTTCGAGGACGTCATGCCCG
AGGACCTGGTGAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTCCCGGTCATCACGTCGGTCCACAACCTCGACCGC
GAGGCCCTTCTCCAGATCCTGGTGGAGCCGCGCAACGCCCTCGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAGGCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GTGGACGTCGTCCTGAAGAACGTGAACCCGACCCTGATCCCGAGGGACGCGCGCGGACGCGGCCCGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.988	96.028	0.528