Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG210_RS21520 Genome accession   NZ_CP107896
Coordinates   4809000..4809683 (+) Length   227 a.a.
NCBI ID   WP_164261167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4804000..4814683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS21490 (OG210_21490) - 4804148..4805353 (-) 1206 WP_328326550.1 acyltransferase family protein -
  OG210_RS21495 (OG210_21495) - 4805852..4806046 (+) 195 WP_164261160.1 hypothetical protein -
  OG210_RS21510 (OG210_21510) tig 4806657..4808048 (+) 1392 WP_328326547.1 trigger factor -
  OG210_RS21515 (OG210_21515) clpP 4808331..4808948 (+) 618 WP_323183829.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG210_RS21520 (OG210_21520) clpP 4809000..4809683 (+) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG210_RS21525 (OG210_21525) clpX 4809840..4811132 (+) 1293 WP_266857025.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG210_RS21530 (OG210_21530) - 4811242..4812267 (-) 1026 WP_328326543.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24885.28 Da        Isoelectric Point: 4.5097

>NTDB_id=648283 OG210_RS21520 WP_164261167.1 4809000..4809683(+) (clpP) [Streptomyces sp. NBC_00466 strain NBC 00466]
MVNTSMNDYSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPVEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMTT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=648283 OG210_RS21520 WP_164261167.1 4809000..4809683(+) (clpP) [Streptomyces sp. NBC_00466 strain NBC 00466]
ATGGTGAACACCAGCATGAACGACTACTCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCTGGTGGCTCGTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCGGCCGGCACCCCCG
GAAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGTATGCGGACCCAGTTGGAAGATCTGCTGGCCAAGCACTCGACGACGCCGGT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGCCTGGTCGACCAGA
TCGTTTCGACCCGCAAGGGCTCCGTGGGAATGATGACCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37