Detailed information NTG0648284

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG210_RS21525
• Genome accession: NZ_CP107896
• Coordinates: 4809840..4811132 (+)
• Length: 430 a.a.
• NCBI ID: WP_266857025.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00466 strain NBC 00466
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4804840..4816132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG210_RS21495 (OG210_21495)	-	4805852..4806046 (+)	195	WP_164261160.1	hypothetical protein	-
OG210_RS21510 (OG210_21510)	tig	4806657..4808048 (+)	1392	WP_328326547.1	trigger factor	-
OG210_RS21515 (OG210_21515)	clpP	4808331..4808948 (+)	618	WP_323183829.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG210_RS21520 (OG210_21520)	clpP	4809000..4809683 (+)	684	WP_164261167.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG210_RS21525 (OG210_21525)	clpX	4809840..4811132 (+)	1293	WP_266857025.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG210_RS21530 (OG210_21530)	-	4811242..4812267 (-)	1026	WP_328326543.1	hypothetical protein	-
OG210_RS21535 (OG210_21535)	-	4812405..4815026 (+)	2622	WP_328326541.1	valine--tRNA ligase	-
OG210_RS21540 (OG210_21540)	-	4815093..4816106 (-)	1014	WP_328326539.1	rod shape-determining protein	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 47072.85 Da
• Isoelectric Point: 4.7809

>NTDB_id=648284 OG210_RS21525 WP_266857025.1 4809840..4811132(+) (clpX) [Streptomyces sp. NBC_00466 strain NBC 00466]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGASREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLERIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRDNVNPTLVPREPRIVGNDGRHEKSA

Nucleotide

• Length: 1293 bp

>NTDB_id=648284 OG210_RS21525 WP_266857025.1 4809840..4811132(+) (clpX) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGGAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGCCCCGGGGTGTACATCTGCGACGAGTGCATTGATCTCTGCAACGAGATCATTGAGGAAGAGCTCGCGGAGACCT
CCGAAGTGCGGTGGGAGGAACTGCCCAAACCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTAGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGCGCCAGCCG
CGAGGACGCGATCGAACTCGCCAAGTCCAACATCCTGTTGCTGGGCCCCACCGGCTCCGGCAAGACGCTGCTCGCCCAGA
CACTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACCGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGTGATGTCTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCTTCGGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACCACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGTCTTGAGCGGATCATCGAGTCCCGGGCGGGCGC
GAAGGGCATCGGCTTCGGCGCGACCATCCGCTCCAAGCGGGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGATCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTTCTGACCTCGGTGCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTGGTCGAGCCGCGCAACGCACTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGTGT
GGAGCTGGACTTCGACCGTCCCGCGCTTGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACCGGGGCGCGCGGTCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGGGTCGTCATCACG
GCGGATGTCGTCCGGGACAACGTGAACCCGACGCTGGTCCCGCGCGAGCCGCGGATCGTCGGCAACGACGGGCGTCACGA
GAAGTCCGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.772	93.721	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.814	0.512