Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG803_RS15345 Genome accession   NZ_CP107894
Coordinates   3349419..3350873 (+) Length   484 a.a.
NCBI ID   WP_327681649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3344419..3355873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS15330 (OG803_15340) - 3344665..3345597 (-) 933 WP_327681643.1 Ppx/GppA phosphatase family protein -
  OG803_RS15335 (OG803_15345) - 3345638..3346441 (+) 804 WP_327681645.1 hypothetical protein -
  OG803_RS15340 (OG803_15350) - 3347505..3349184 (-) 1680 WP_327681647.1 hypothetical protein -
  OG803_RS15345 (OG803_15355) radA/sms 3349419..3350873 (+) 1455 WP_327681649.1 DNA repair protein RadA Machinery gene
  OG803_RS15350 (OG803_15360) disA 3350918..3352042 (+) 1125 WP_313944917.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG803_RS15355 (OG803_15365) - 3352150..3352968 (-) 819 WP_327681651.1 hypothetical protein -
  OG803_RS15360 (OG803_15370) - 3353583..3354488 (+) 906 WP_327681653.1 A/G-specific adenine glycosylase -
  OG803_RS15365 (OG803_15375) - 3354673..3355278 (+) 606 WP_327681655.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50897.01 Da        Isoelectric Point: 8.0102

>NTDB_id=648183 OG803_RS15345 WP_327681649.1 3349419..3350873(+) (radA/sms) [Streptomyces sp. NBC_00467]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTIEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPAGMKVTEVADVGDALRVLPRGRQRGSEGAAVTAPRKERAEAPRDD
DTRR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=648183 OG803_RS15345 WP_327681649.1 3349419..3350873(+) (radA/sms) [Streptomyces sp. NBC_00467]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGATCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCGCCGGCC
GCGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGACGGCAGGCGACGGCCCGCTCCACCGGGGTGGACGAGCTC
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTCGTGCTGCTCGCCGGTGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGGACCCTGTATGTGACGGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCCTGCACGACCATCTGTATCTGGCGGCCGAGACCGATCTGTCCGCCGTTCTC
GGTCACTTGGACGCCGTCAAGCCGTCGCTGCTGGTCCTCGACTCCGTCCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCGCTGATCCGCGCGTCCAAGGAGCGCGGGATGTCCACGATCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGTTGCTGGAGCACCTCGTCGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGTCTCGTACGGGGCGTCAAGAACCGTTACGGAGCGACGGACGAAGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGACTCGCCGACCCCTCGGGCCTGTTCCTGACCCGCCGGGACGCGCCCGTGCCCG
GGACCTGTCTGACGGTCACCCTGGAGGGCCGGCGCCCGCTCGTCGCCGAGGTGCAGGCACTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACGACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCTCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCGGCGGACCTGG
CGATCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAATCTGGTCGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCCGGCTCTCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTGGT
CCCGTCCGACCCGGGCAAGGTGCCCGCGGGCATGAAGGTGACGGAAGTGGCCGATGTCGGAGACGCTCTGAGGGTGCTGC
CGCGCGGGCGGCAGAGGGGTTCGGAGGGGGCTGCGGTCACGGCACCGCGCAAAGAGCGTGCGGAGGCCCCACGGGACGAC
GACACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

93.595

0.415
  radA Streptococcus pneumoniae Rx1

42.699

93.388

0.399
  radA Streptococcus pneumoniae D39

42.699

93.388

0.399
  radA Streptococcus pneumoniae R6

42.699

93.388

0.399
  radA Streptococcus pneumoniae TIGR4

42.699

93.388

0.399
  radA Streptococcus mitis SK321

44.159

88.43

0.39
  radA Streptococcus mitis NCTC 12261

44.159

88.43

0.39