Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHV16_RS18010 Genome accession   NZ_CP107889
Coordinates   3948771..3949376 (-) Length   201 a.a.
NCBI ID   WP_266725478.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3943771..3954376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS17995 (OHV16_18010) - 3945443..3946492 (+) 1050 WP_327670357.1 hypothetical protein -
  OHV16_RS18000 (OHV16_18015) clpX 3946608..3947894 (-) 1287 WP_266719660.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHV16_RS18005 (OHV16_18020) clpP 3948050..3948709 (-) 660 WP_266719658.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHV16_RS18010 (OHV16_18025) clpP 3948771..3949376 (-) 606 WP_266725478.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHV16_RS18015 (OHV16_18030) tig 3949754..3951136 (-) 1383 WP_327670358.1 trigger factor -
  OHV16_RS18030 (OHV16_18045) - 3951663..3951857 (-) 195 WP_255971564.1 hypothetical protein -
  OHV16_RS18035 (OHV16_18050) - 3952369..3953526 (+) 1158 WP_327670359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21161.99 Da        Isoelectric Point: 4.6831

>NTDB_id=648083 OHV16_RS18010 WP_266725478.1 3948771..3949376(-) (clpP) [Streptomyces sp. NBC_00470]
MPSAAGEPSIGGGLGDHVYNRLLGERIVFLGQQVDDDIANKITAQMLLLAADPDKDIFLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGSAGKRFALPHTDILMHQGSAGIGGTASDVKIQAEYLLRTKKRMAEITARHSGQSVE
TIIRDGDRDRWFTTEEAKEYGLIDEIITAATGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=648083 OHV16_RS18010 WP_266725478.1 3948771..3949376(-) (clpP) [Streptomyces sp. NBC_00470]
ATGCCTTCCGCCGCAGGCGAGCCGTCCATCGGTGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCGGCGAGCGCAT
CGTCTTCCTCGGCCAGCAGGTCGACGACGACATCGCGAACAAGATCACCGCACAGATGCTGCTCCTTGCCGCAGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCTGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTCGTCACCATCGGCATGGGTATGGCCGCCTCCATGGGGCAGTTCCTGCTGACCGGCGGCTCGGCGGG
CAAGCGCTTCGCGCTGCCGCACACCGACATCCTGATGCACCAGGGCTCCGCGGGCATCGGCGGTACCGCGTCGGACGTGA
AGATCCAGGCCGAGTACCTGCTGCGCACGAAGAAGCGCATGGCCGAGATCACCGCGCGCCACTCGGGCCAGAGTGTCGAG
ACGATCATCCGTGACGGTGACCGCGACCGCTGGTTCACCACCGAGGAGGCCAAGGAGTACGGCCTCATCGACGAGATCAT
CACTGCCGCTACGGGCGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

50.543

91.542

0.463
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

91.542

0.458
  clpP Bacillus subtilis subsp. subtilis str. 168

53.488

85.572

0.458
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

90.547

0.453
  clpP Streptococcus mutans UA159

50.289

86.07

0.433
  clpP Streptococcus pneumoniae D39

49.711

86.07

0.428
  clpP Streptococcus pneumoniae Rx1

49.711

86.07

0.428
  clpP Streptococcus pneumoniae R6

49.711

86.07

0.428
  clpP Streptococcus pneumoniae TIGR4

49.711

86.07

0.428
  clpP Streptococcus thermophilus LMD-9

49.425

86.567

0.428
  clpP Streptococcus thermophilus LMG 18311

49.425

86.567

0.428
  clpP Streptococcus pyogenes JRS4

48.555

86.07

0.418
  clpP Streptococcus pyogenes MGAS315

48.555

86.07

0.418