Detailed information NTG0648081

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHV16_RS18000
• Genome accession: NZ_CP107889
• Coordinates: 3946608..3947894 (-)
• Length: 428 a.a.
• NCBI ID: WP_266719660.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00470
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3941608..3952894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHV16_RS17990 (OHV16_18005)	-	3942676..3945327 (-)	2652	WP_327670356.1	valine--tRNA ligase	-
OHV16_RS17995 (OHV16_18010)	-	3945443..3946492 (+)	1050	WP_327670357.1	hypothetical protein	-
OHV16_RS18000 (OHV16_18015)	clpX	3946608..3947894 (-)	1287	WP_266719660.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHV16_RS18005 (OHV16_18020)	clpP	3948050..3948709 (-)	660	WP_266719658.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHV16_RS18010 (OHV16_18025)	clpP	3948771..3949376 (-)	606	WP_266725478.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHV16_RS18015 (OHV16_18030)	tig	3949754..3951136 (-)	1383	WP_327670358.1	trigger factor	-
OHV16_RS18030 (OHV16_18045)	-	3951663..3951857 (-)	195	WP_255971564.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46714.35 Da
• Isoelectric Point: 4.6988

>NTDB_id=648081 OHV16_RS18000 WP_266719660.1 3946608..3947894(-) (clpX) [Streptomyces sp. NBC_00470]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEA
AKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTSASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATLHSKRELDEKDQFQEVMPEDLVKFGMIPEFIGRLPVITAVQNLDR
EALLQILVEPKNALVKQYERLFELDGVELDFEREALEAIADQAILRRTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
AEAVHSNVNPTLIPRDARGGGSGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=648081 OHV16_RS18000 WP_266719660.1 3946608..3947894(-) (clpX) [Streptomyces sp. NBC_00470]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGTCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAAGTGCGCTGGGAGGAACTGCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGAGCTACGTCGTAGGACAGGAAGCC
GCAAAGAAGGCCCTGTCCGTAGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGGGCGAACGGGCG
GGACGACGCGATCGAACTCGCGAAGTCCAACATCCTTCTCCTCGGCCCGACCGGCTCCGGCAAGACGCTCCTCGCACAGA
CGCTGGCGCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATTCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGTCGGAGAACCCGTCGATCACGCGCGATGTGAGCGGTGAGGGCGTACAGCAGGCGC
TCCTCAAGATCCTTGAGGGGACCAGCGCCTCGGTTCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGTCTCGAGAAGATCATCGAGTCGCGGGCGGGTGC
CAAGGGCATCGGCTTCGGCGCGACCCTGCACTCCAAGCGCGAGCTCGACGAGAAGGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGCCTCCCGGTCATCACCGCGGTCCAGAACCTCGACCGT
GAGGCGCTGCTCCAGATCCTCGTCGAGCCGAAGAACGCTCTGGTCAAGCAGTACGAGCGGCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCGCTCGAGGCCATCGCCGACCAGGCGATCCTGCGCCGCACCGGTGCGCGCGGGCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
GCGGAAGCCGTCCACTCGAACGTGAACCCGACGCTGATCCCGCGGGACGCCCGCGGTGGCGGCAGCGGCGAGCAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	64.179	93.925	0.603
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521