Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   L1S45_RS14760 Genome accession   NZ_CP091091
Coordinates   3177656..3178795 (+) Length   379 a.a.
NCBI ID   WP_017766703.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain b2-100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3172656..3183795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S45_RS14730 (L1S45_14735) - 3172838..3173218 (-) 381 WP_005302618.1 diacylglycerol kinase -
  L1S45_RS14735 (L1S45_14740) - 3173375..3174436 (+) 1062 WP_005302620.1 3-deoxy-7-phosphoheptulonate synthase -
  L1S45_RS14740 (L1S45_14745) - 3174516..3175301 (-) 786 WP_252600988.1 ATP-binding cassette domain-containing protein -
  L1S45_RS14745 (L1S45_14750) btuC 3175288..3176295 (-) 1008 WP_017766701.1 vitamin B12 ABC transporter permease BtuC -
  L1S45_RS14750 (L1S45_14755) - 3176395..3177126 (-) 732 WP_024942579.1 transporter substrate-binding domain-containing protein -
  L1S45_RS14755 (L1S45_14760) - 3177240..3177596 (+) 357 WP_005302630.1 DMT family protein -
  L1S45_RS14760 (L1S45_14765) pilU 3177656..3178795 (+) 1140 WP_017766703.1 type IVa pilus ATPase TapW Machinery gene
  L1S45_RS14765 (L1S45_14770) glgC 3179078..3180349 (+) 1272 WP_252600990.1 glucose-1-phosphate adenylyltransferase -
  L1S45_RS14770 (L1S45_14775) - 3180485..3180964 (+) 480 WP_252600992.1 WbuC family cupin fold metalloprotein -
  L1S45_RS14775 (L1S45_14780) - 3181063..3181305 (-) 243 WP_005302637.1 FeoC-like transcriptional regulator -
  L1S45_RS14780 (L1S45_14785) feoB 3181302..3183575 (-) 2274 WP_252600995.1 Fe(2+) transporter permease subunit FeoB -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42171.19 Da        Isoelectric Point: 6.2561

>NTDB_id=647606 L1S45_RS14760 WP_017766703.1 3177656..3178795(+) (pilU) [Aeromonas dhakensis strain b2-100]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLSETPLEPGEVASIADAIMDGEQKQQFEKELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPTVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMVKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKDDLF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=647606 L1S45_RS14760 WP_017766703.1 3177656..3178795(+) (pilU) [Aeromonas dhakensis strain b2-100]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGACGGCTCAGACCTCTATCTGTCGACCGGCGCGCCCCCCTG
TGCCAAGTTCAACGGCGGCCTGCGCCCCTTGAGCGAGACGCCGCTCGAGCCCGGCGAGGTGGCCAGCATAGCCGACGCCA
TCATGGACGGCGAGCAGAAGCAGCAGTTTGAAAAGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATCGGCCGC
TTTCGGATCAACATCTTCAAGCAGCGCAACGAAGTCTCCCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATTTGAAACTGCCCACCGTGCTGCTCGACACCATCATGGAGAAACGGGGGCTGGTGCTGTTCGTCGGCGGCACCGGCT
CGGGCAAATCCACCTCGCTCGCGGCCCTTATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTGCACCGCCACCGCAAGAGCATCATCAACCAGCGGGAGGTGGGGGTGGATACCCGCAGCTTCCACGC
CGCCCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCCTTATCGGCGAAATTCGCGATCGCGAAACCATGGAGCATG
CGCTGGCCTTCTCGGAGACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGGCCCCAGCTGCTCAACGATCTTGGCAACAACCTCAAGGCGTTTGTCTCCCAGCG
GCTGGTGAAAACCACTGATGGCGGCCGCCGGGCTGCGGTGGAGATCATGCTGGGCACCCACACCATCCGCGACATGGTCA
AGCGCGGCGAGTTTGGCGGCCTCAAGGAGGTGATGGAGAAGTCCAAGGCCCTCGGCATGGTCACCTTCGACAGTGCCCTG
TTTGATCTGGTAGTCGAAGGGGTGATCGACGAGGAGGAGGCAGTGAAGAACGCCGATTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTATGGAAGGAGAAGGGCCAGATCGCCAGCAGCAGCGATGCCACCGGCTGGAGCCTGGAGCCCACCAAGGACG
AAAAGGACGATCTGTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

53.867

98.945

0.533
  pilU Acinetobacter baylyi ADP1

52.958

93.668

0.496
  pilU Vibrio cholerae strain A1552

50

92.348

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.793

93.14

0.38
  pilT Pseudomonas aeruginosa PAK

40.407

90.765

0.367
  pilT Legionella pneumophila strain ERS1305867

41.317

88.127

0.364
  pilT Legionella pneumophila strain Lp02

41.317

88.127

0.364
  pilT Pseudomonas stutzeri DSM 10701

39.826

90.765

0.361