Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS03085 Genome accession   NZ_CP107869
Coordinates   751579..752244 (+) Length   221 a.a.
NCBI ID   WP_327714518.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 746579..757244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS03060 (OG381_03060) - 747219..747344 (+) 126 WP_327714513.1 hypothetical protein -
  OG381_RS03065 (OG381_03065) - 747535..747990 (+) 456 WP_327714514.1 MarR family transcriptional regulator -
  OG381_RS03070 (OG381_03070) - 748425..749363 (+) 939 WP_327714515.1 ATP-binding cassette domain-containing protein -
  OG381_RS03075 (OG381_03075) - 749360..750205 (+) 846 WP_327714516.1 ABC transporter permease -
  OG381_RS03080 (OG381_03080) - 750314..751582 (+) 1269 WP_327714517.1 histidine kinase -
  OG381_RS03085 (OG381_03085) vraR 751579..752244 (+) 666 WP_327714518.1 response regulator transcription factor Regulator
  OG381_RS03090 (OG381_03090) - 752299..753438 (-) 1140 WP_327714519.1 XdhC/CoxI family protein -
  OG381_RS03095 (OG381_03095) - 753598..755784 (-) 2187 WP_327714520.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  OG381_RS03100 (OG381_03100) - 755781..756761 (-) 981 WP_327714521.1 xanthine dehydrogenase family protein subunit M -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23695.26 Da        Isoelectric Point: 5.0812

>NTDB_id=647513 OG381_RS03085 WP_327714518.1 751579..752244(+) (vraR) [Streptomyces sp. NBC_00490]
MTIRVLLADDQALVRTSFRMLIESEPDMEVVGEAATGEEAVRLARSTCADVVLMDIRMPDMDGLAATRAISADEDLAGVR
VLILTTFEADEHVFQALRAGASGFLGKSVDLSYLLDAVRLVARGEALLSPRATKALIAHYLTTPDMTSTPAPELTSLTVR
ERQVLALVAGGLSNDAIAEQLHISPSTAKTHVNRIMAKLDVRARAQLVVVAYQTGYAHPSA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=647513 OG381_RS03085 WP_327714518.1 751579..752244(+) (vraR) [Streptomyces sp. NBC_00490]
ATGACCATCCGCGTTCTGCTCGCCGACGACCAGGCCCTCGTCCGCACCAGCTTCCGCATGCTCATCGAGTCGGAGCCGGA
CATGGAGGTGGTCGGAGAGGCTGCGACGGGTGAGGAGGCGGTCAGGCTGGCCCGCAGCACGTGTGCCGACGTCGTGCTGA
TGGACATCCGGATGCCCGACATGGACGGTCTCGCCGCCACCCGCGCCATCTCGGCGGACGAGGACCTCGCGGGCGTACGG
GTACTGATCCTGACGACCTTCGAGGCCGACGAGCACGTCTTCCAGGCGCTGCGTGCCGGGGCCAGCGGGTTCCTGGGAAA
AAGTGTGGACCTCTCCTACCTCCTCGACGCCGTCCGGCTGGTCGCCCGCGGTGAAGCGCTGCTGTCACCCAGGGCGACCA
AGGCACTCATCGCCCACTACCTCACCACGCCCGACATGACGAGCACTCCGGCCCCGGAGCTGACGAGCCTGACCGTACGC
GAGCGCCAAGTGCTCGCCCTCGTGGCCGGCGGCCTCTCCAACGACGCCATCGCCGAACAGCTCCACATCTCGCCCTCGAC
CGCCAAGACCCATGTGAACCGCATCATGGCCAAGCTCGACGTCCGCGCCCGCGCCCAACTGGTCGTGGTCGCCTACCAGA
CCGGCTACGCCCACCCCAGCGCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.967

96.38

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.371