Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   L0B52_RS05060 Genome accession   NZ_CP090975
Coordinates   1087902..1088336 (-) Length   144 a.a.
NCBI ID   WP_409202288.1    Uniprot ID   -
Organism   Suttonella sp. R2A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082902..1093336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B52_RS05045 (L0B52_05045) - 1083137..1084945 (+) 1809 WP_235063660.1 SurA N-terminal domain-containing protein -
  L0B52_RS05050 (L0B52_05050) argF 1085031..1086032 (-) 1002 WP_235063661.1 ornithine carbamoyltransferase -
  L0B52_RS05055 (L0B52_05055) - 1086115..1087728 (-) 1614 WP_235063662.1 PglL family O-oligosaccharyltransferase -
  L0B52_RS05060 (L0B52_05060) pilA/pilA1 1087902..1088336 (-) 435 WP_409202288.1 pilin Machinery gene
  L0B52_RS05070 (L0B52_05070) pilA/pilA1 1088412..1088873 (-) 462 WP_311195327.1 pilin Machinery gene
  L0B52_RS05080 (L0B52_05080) - 1089098..1090351 (+) 1254 WP_235063663.1 sodium:proton antiporter -
  L0B52_RS05085 (L0B52_05085) gshB 1091155..1092102 (-) 948 WP_235063664.1 glutathione synthase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15018.18 Da        Isoelectric Point: 4.9856

>NTDB_id=646836 L0B52_RS05060 WP_409202288.1 1087902..1088336(-) (pilA/pilA1) [Suttonella sp. R2A3]
MSCMKEQGFTLIELMIVIAIIGILAAIALPAYQDYVARAQASEALIVTSGLRNDIAVYWGENRVFPPAGHALASSATALD
GKYFDPGNISVGTSGVVTVAFNSGANAGKTVVMTPEANAGNGQLITWRCNGGSIEAQRLPQTCQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=646836 L0B52_RS05060 WP_409202288.1 1087902..1088336(-) (pilA/pilA1) [Suttonella sp. R2A3]
ATGTCATGCATGAAAGAACAAGGCTTCACCTTGATTGAACTGATGATTGTGATTGCAATTATCGGTATCTTGGCGGCGAT
TGCCTTACCGGCGTATCAAGATTATGTCGCGCGAGCACAAGCTAGCGAAGCGTTGATCGTTACCAGTGGTTTGCGCAATG
ATATTGCCGTGTATTGGGGGGAGAACCGTGTATTCCCACCAGCTGGACATGCGCTCGCCAGTAGTGCAACAGCCCTCGAT
GGTAAATATTTTGATCCAGGTAATATTAGTGTGGGCACCAGTGGTGTGGTGACTGTAGCATTTAATTCAGGTGCGAATGC
TGGGAAAACGGTAGTGATGACGCCGGAAGCTAATGCAGGTAATGGACAATTAATTACCTGGCGTTGTAATGGTGGTAGCA
TTGAAGCGCAGCGTTTACCACAAACTTGCCAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-144)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

53.378

100

0.549
  pilE Neisseria gonorrhoeae MS11

37.267

100

0.417
  pilA2 Legionella pneumophila str. Paris

40.816

100

0.417
  pilA2 Legionella pneumophila strain ERS1305867

40.136

100

0.41
  pilE Neisseria gonorrhoeae strain FA1090

35.625

100

0.396
  pilA Glaesserella parasuis strain SC1401

39.706

94.444

0.375
  pilA Pseudomonas aeruginosa PAK

35.294

100

0.375