Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1O99_RS03750 Genome accession   NZ_CP090971
Coordinates   777163..778434 (-) Length   423 a.a.
NCBI ID   WP_012915193.1    Uniprot ID   D2UBN2
Organism   Xanthomonas albilineans strain Xa21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772163..783434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O99_RS03730 - 773101..773778 (+) 678 WP_045728928.1 response regulator transcription factor -
  L1O99_RS03735 - 774274..775584 (+) 1311 WP_012915190.1 HAMP domain-containing sensor histidine kinase -
  L1O99_RS03740 coaE 775657..776280 (-) 624 WP_012915191.1 dephospho-CoA kinase -
  L1O99_RS03745 - 776293..777156 (-) 864 WP_012915192.1 A24 family peptidase -
  L1O99_RS03750 pilC 777163..778434 (-) 1272 WP_012915193.1 type II secretion system F family protein Machinery gene
  L1O99_RS03755 - 778799..779236 (+) 438 WP_307734488.1 pilin -
  L1O99_RS03760 pilB 779386..781113 (+) 1728 WP_012915195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1O99_RS03765 pilR 781257..782645 (-) 1389 WP_012915196.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46262.73 Da        Isoelectric Point: 10.2315

>NTDB_id=646761 L1O99_RS03750 WP_012915193.1 777163..778434(-) (pilC) [Xanthomonas albilineans strain Xa21]
MSATRSAVKSAVKKEPVARATSQQIQFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKPKPKPLFGAAGSKV
TPKDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRHPVQFDELYRNLVKAGEGA
GVLETVLETVATYKENIEALKGKIKKALFYPAMVMAVAVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVA
YWWMMLIVVIGSIVGFTFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNS
VYEKSVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFI
GTIVGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=646761 L1O99_RS03750 WP_012915193.1 777163..778434(-) (pilC) [Xanthomonas albilineans strain Xa21]
ATGTCCGCAACTCGCAGCGCAGTCAAGAGCGCAGTCAAAAAAGAACCGGTCGCGCGCGCTACCAGCCAACAAATTCAGTT
CGTCTGGGAGGGCACCGACAAACGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAAAACGCCAACCTGCTGCGCGCGG
AACTGCGCCGCCAGGGCATCACCCCCACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGCGCGGCGGGCAGCAAGGTC
ACCCCCAAGGACATCGCCTTCTTCAGCCGGCAAATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTGGGGTCGCTGGA
GATCATCGCCAGCGGGCACAAGAACCCGCGCATGAAAAAGATGGTCGAGCAGATCCGCACCGATATCGAGGGCGGCTCCT
CGCTCTACGAAGCGATCAGCCGGCATCCGGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCT
GGCGTTCTCGAAACCGTGCTGGAAACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTTAAAGGCAAGATCAAGAAGGC
CTTGTTCTATCCGGCCATGGTGATGGCCGTCGCAGTGATCGTCAGCTGCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCG
AGGACGTGTTCAAGGGCTTCGGCGCGCAACTGCCGGCCTTCACCCAGATGATCGTGACGGCCTCGCGCTTCATGGTCGCG
TATTGGTGGATGATGCTGATCGTGGTGATCGGCAGCATCGTGGGCTTCACCTTCGCCTACAAGCGCTCGCCAGCCATGCA
GCATGGCATGGACCGGCTGATCCTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTTCGGTGGCGCGCTTCTCGC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAACAGC
GTCTACGAAAAATCCGTCTTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCGGTGAACGTGGCGATGAAGCAGACCAA
TCTGTTTCCGCACATGGTGATCCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTGGACGCGATGCTGTTCAAGGTGG
CCGAGTATTTCGAACAGGAAGTCAACAACGCGGTCGATGCCTTGAGCAGCCTGATGGAACCGCTGATCATGGTGTTCATC
GGCACCATCGTCGGCGGCATGGTCATCGGCATGTATCTACCGATCTTCAAGCTGGCCTCGGTGGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2UBN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

93.617

0.496
  pilC Acinetobacter baumannii D1279779

52.645

93.853

0.494
  pilC Legionella pneumophila strain ERS1305867

52.261

94.09

0.492
  pilC Acinetobacter baylyi ADP1

51.385

93.853

0.482
  pilG Neisseria gonorrhoeae MS11

43.069

95.508

0.411
  pilG Neisseria meningitidis 44/76-A

42.574

95.508

0.407
  pilC Vibrio cholerae strain A1552

42.211

94.09

0.397
  pilC Vibrio campbellii strain DS40M4

39.152

94.799

0.371