Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | L1O99_RS03760 | Genome accession | NZ_CP090971 |
| Coordinates | 779386..781113 (+) | Length | 575 a.a. |
| NCBI ID | WP_012915195.1 | Uniprot ID | D2UBN4 |
| Organism | Xanthomonas albilineans strain Xa21 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 774386..786113
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1O99_RS03740 | coaE | 775657..776280 (-) | 624 | WP_012915191.1 | dephospho-CoA kinase | - |
| L1O99_RS03745 | - | 776293..777156 (-) | 864 | WP_012915192.1 | A24 family peptidase | - |
| L1O99_RS03750 | pilC | 777163..778434 (-) | 1272 | WP_012915193.1 | type II secretion system F family protein | Machinery gene |
| L1O99_RS03755 | - | 778799..779236 (+) | 438 | WP_307734488.1 | pilin | - |
| L1O99_RS03760 | pilB | 779386..781113 (+) | 1728 | WP_012915195.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| L1O99_RS03765 | pilR | 781257..782645 (-) | 1389 | WP_012915196.1 | sigma-54 dependent transcriptional regulator | Regulator |
| L1O99_RS03770 | - | 782733..784346 (-) | 1614 | WP_012915197.1 | ATP-binding protein | - |
| L1O99_RS03775 | sucC | 784637..785800 (+) | 1164 | WP_012915198.1 | ADP-forming succinate--CoA ligase subunit beta | - |
Sequence
Protein
Download Length: 575 a.a. Molecular weight: 62509.65 Da Isoelectric Point: 5.9527
>NTDB_id=646762 L1O99_RS03760 WP_012915195.1 779386..781113(+) (pilB) [Xanthomonas albilineans strain Xa21]
MSAISANLVGITGIARRLVQDGVLEEAAARAAMAQATEARVPLPQWFAEKKLVTAAQLAAANAVEFGVPLLDASVFDPSQ
NAMKLVSEELLHKHQVLPLFKRGSRLFVGISNPTQTRALDDIKFHTNLTVEPILVDEDQIRRTLEQWHSSNDALGSALGG
DDEGMDNLDVGGDEDGGSGDTGMDAKSDDTPVVKFVNKVLIDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKNKQIDFRVSTLPTLFGEKIVLRILDGSAAKLGIDKLGYEPEQQQLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPVKLPDKA
LLAEGFTEADIAAGIQLYEPVGCEECTEGYKGRTGIYQVMPMNDEIAAIVLQGGNAMDIASAAQKIGVNDLRQSALLKAR
NGITSLAEINRVTKD
MSAISANLVGITGIARRLVQDGVLEEAAARAAMAQATEARVPLPQWFAEKKLVTAAQLAAANAVEFGVPLLDASVFDPSQ
NAMKLVSEELLHKHQVLPLFKRGSRLFVGISNPTQTRALDDIKFHTNLTVEPILVDEDQIRRTLEQWHSSNDALGSALGG
DDEGMDNLDVGGDEDGGSGDTGMDAKSDDTPVVKFVNKVLIDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKNKQIDFRVSTLPTLFGEKIVLRILDGSAAKLGIDKLGYEPEQQQLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPVKLPDKA
LLAEGFTEADIAAGIQLYEPVGCEECTEGYKGRTGIYQVMPMNDEIAAIVLQGGNAMDIASAAQKIGVNDLRQSALLKAR
NGITSLAEINRVTKD
Nucleotide
Download Length: 1728 bp
>NTDB_id=646762 L1O99_RS03760 WP_012915195.1 779386..781113(+) (pilB) [Xanthomonas albilineans strain Xa21]
ATGAGCGCCATATCAGCCAATCTCGTCGGCATCACCGGCATCGCCCGCCGTCTCGTTCAGGATGGGGTCTTGGAGGAGGC
CGCGGCGCGGGCCGCCATGGCCCAGGCGACCGAGGCCAGGGTCCCGCTGCCGCAATGGTTTGCCGAGAAGAAGCTGGTCA
CCGCTGCGCAGTTGGCCGCCGCCAATGCGGTGGAATTCGGCGTGCCATTGCTGGACGCCTCGGTGTTCGACCCCAGCCAG
AACGCGATGAAGCTGGTCAGCGAGGAACTGCTGCACAAGCACCAGGTGCTGCCGTTGTTCAAGCGCGGTAGCCGGCTGTT
CGTGGGGATCAGCAATCCCACCCAGACCCGCGCGCTGGACGACATCAAGTTCCATACCAATCTCACCGTCGAGCCGATCC
TGGTCGATGAGGACCAGATCCGGCGCACGCTGGAGCAGTGGCATTCCAGCAACGATGCGCTCGGCAGTGCGTTGGGCGGC
GACGACGAGGGCATGGACAACCTCGATGTGGGCGGCGACGAGGACGGCGGCAGCGGCGACACCGGTATGGACGCCAAGAG
CGACGACACGCCGGTGGTCAAGTTCGTCAACAAGGTGCTGATCGATGCGATCCGCCGCGGTGCCTCGGATATCCATTTCG
AGCCCTACGAGGACGACTACCGGGTGCGCCTGCGCATCGATGGCCTGCTCAAGAACGTGGCCAAGGCGCCGGTCAAGCTC
AATCAGCGCATCGCCGCGCGGCTGAAGGTGATGGCGCAGTTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCAT
CAAGCTCAATCTGTCCAAGAACAAGCAGATCGACTTCCGCGTCAGCACACTGCCGACGCTGTTCGGCGAGAAGATCGTGC
TGCGTATTCTCGACGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTCGGCTACGAGCCGGAACAGCAGCAGTTGTTCCTG
GACGCGATCCATAAGCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGCTCCGGCAAGACGGTGTCGCTGTATACCGC
GCTGGGCATTCTCAACGACGAAACCCGCAACATTTCCACCGCCGAGGACCCGGTGGAAATCCGTCTGCCGGGCGTCAATC
AGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCAGCCTTGCGTTCGTTCCTGCGGCAGGACCCTGACATCATC
ATGGTCGGCGAAATCCGCGACTTGGAAACCGCCGAGATCGCGATCAAGGCGGCGCAGACCGGTCACATGGTGCTGTCCAC
CCTGCACACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAACATGGGCATCGCCCCCTACAACATCACCAGTTCGG
TGACCTTGGTGATCGCGCAGCGTCTGGCGCGGCGGCTGTGCAACAACTGCAAACGCCCGGTCAAATTGCCGGATAAAGCC
TTGCTGGCCGAAGGCTTCACCGAAGCGGACATCGCCGCGGGGATCCAGTTGTACGAGCCGGTCGGTTGCGAGGAATGCAC
CGAAGGCTACAAGGGCCGCACCGGCATCTACCAGGTGATGCCGATGAACGACGAAATCGCCGCGATCGTGCTGCAGGGCG
GTAACGCGATGGACATCGCCAGCGCCGCGCAGAAGATCGGGGTCAATGATCTGCGTCAGTCGGCCTTACTCAAGGCGCGC
AATGGCATCACCAGTTTGGCTGAGATCAACCGCGTGACCAAGGATTGA
ATGAGCGCCATATCAGCCAATCTCGTCGGCATCACCGGCATCGCCCGCCGTCTCGTTCAGGATGGGGTCTTGGAGGAGGC
CGCGGCGCGGGCCGCCATGGCCCAGGCGACCGAGGCCAGGGTCCCGCTGCCGCAATGGTTTGCCGAGAAGAAGCTGGTCA
CCGCTGCGCAGTTGGCCGCCGCCAATGCGGTGGAATTCGGCGTGCCATTGCTGGACGCCTCGGTGTTCGACCCCAGCCAG
AACGCGATGAAGCTGGTCAGCGAGGAACTGCTGCACAAGCACCAGGTGCTGCCGTTGTTCAAGCGCGGTAGCCGGCTGTT
CGTGGGGATCAGCAATCCCACCCAGACCCGCGCGCTGGACGACATCAAGTTCCATACCAATCTCACCGTCGAGCCGATCC
TGGTCGATGAGGACCAGATCCGGCGCACGCTGGAGCAGTGGCATTCCAGCAACGATGCGCTCGGCAGTGCGTTGGGCGGC
GACGACGAGGGCATGGACAACCTCGATGTGGGCGGCGACGAGGACGGCGGCAGCGGCGACACCGGTATGGACGCCAAGAG
CGACGACACGCCGGTGGTCAAGTTCGTCAACAAGGTGCTGATCGATGCGATCCGCCGCGGTGCCTCGGATATCCATTTCG
AGCCCTACGAGGACGACTACCGGGTGCGCCTGCGCATCGATGGCCTGCTCAAGAACGTGGCCAAGGCGCCGGTCAAGCTC
AATCAGCGCATCGCCGCGCGGCTGAAGGTGATGGCGCAGTTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCAT
CAAGCTCAATCTGTCCAAGAACAAGCAGATCGACTTCCGCGTCAGCACACTGCCGACGCTGTTCGGCGAGAAGATCGTGC
TGCGTATTCTCGACGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTCGGCTACGAGCCGGAACAGCAGCAGTTGTTCCTG
GACGCGATCCATAAGCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGCTCCGGCAAGACGGTGTCGCTGTATACCGC
GCTGGGCATTCTCAACGACGAAACCCGCAACATTTCCACCGCCGAGGACCCGGTGGAAATCCGTCTGCCGGGCGTCAATC
AGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCAGCCTTGCGTTCGTTCCTGCGGCAGGACCCTGACATCATC
ATGGTCGGCGAAATCCGCGACTTGGAAACCGCCGAGATCGCGATCAAGGCGGCGCAGACCGGTCACATGGTGCTGTCCAC
CCTGCACACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAACATGGGCATCGCCCCCTACAACATCACCAGTTCGG
TGACCTTGGTGATCGCGCAGCGTCTGGCGCGGCGGCTGTGCAACAACTGCAAACGCCCGGTCAAATTGCCGGATAAAGCC
TTGCTGGCCGAAGGCTTCACCGAAGCGGACATCGCCGCGGGGATCCAGTTGTACGAGCCGGTCGGTTGCGAGGAATGCAC
CGAAGGCTACAAGGGCCGCACCGGCATCTACCAGGTGATGCCGATGAACGACGAAATCGCCGCGATCGTGCTGCAGGGCG
GTAACGCGATGGACATCGCCAGCGCCGCGCAGAAGATCGGGGTCAATGATCTGCGTCAGTCGGCCTTACTCAAGGCGCGC
AATGGCATCACCAGTTTGGCTGAGATCAACCGCGTGACCAAGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
55.382 |
100 |
0.555 |
| pilB | Acinetobacter baylyi ADP1 |
56.007 |
98.435 |
0.551 |
| pilB | Legionella pneumophila strain ERS1305867 |
51.408 |
98.783 |
0.508 |
| pilB | Vibrio cholerae strain A1552 |
49.301 |
99.478 |
0.49 |
| pilF | Neisseria gonorrhoeae MS11 |
48.858 |
98.957 |
0.483 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.986 |
98.087 |
0.461 |
| pilB | Vibrio campbellii strain DS40M4 |
46.06 |
99.304 |
0.457 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.808 |
90.435 |
0.36 |