Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1F30_RS04880 Genome accession   NZ_CP090959
Coordinates   1102902..1104134 (-) Length   410 a.a.
NCBI ID   WP_253360124.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097902..1109134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS04855 (L1F30_04855) argJ 1098912..1100132 (+) 1221 WP_253360107.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  L1F30_RS04860 (L1F30_04860) - 1100136..1101104 (+) 969 WP_253360109.1 Nudix family hydrolase -
  L1F30_RS04865 (L1F30_04865) - 1101157..1101366 (-) 210 WP_253360111.1 DNA gyrase inhibitor YacG -
  L1F30_RS04870 (L1F30_04870) coaE 1101405..1102019 (-) 615 WP_253360120.1 dephospho-CoA kinase -
  L1F30_RS04875 (L1F30_04875) pilD 1102009..1102854 (-) 846 WP_305879920.1 A24 family peptidase Machinery gene
  L1F30_RS04880 (L1F30_04880) pilC 1102902..1104134 (-) 1233 WP_253360124.1 type II secretion system F family protein Machinery gene
  L1F30_RS04885 (L1F30_04885) pilB 1104140..1105870 (-) 1731 WP_253360126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1F30_RS04895 (L1F30_04895) - 1106204..1106719 (+) 516 WP_305879921.1 pilin -
  L1F30_RS04900 (L1F30_04900) - 1106943..1107968 (+) 1026 WP_253360128.1 hypothetical protein -
  L1F30_RS04905 (L1F30_04905) - 1107961..1109076 (+) 1116 WP_253360130.1 acyltransferase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44646.50 Da        Isoelectric Point: 9.0109

>NTDB_id=646676 L1F30_RS04880 WP_253360124.1 1102902..1104134(-) (pilC) [Simiduia sp. 21SJ11W-1]
MATAKASAQAKPSVFIYKGTDKKGRKISGEIDGSSAALIKAQLLKQGIKATTVRKKPKPMFGGGGKKIQPQDVAIFTRQM
ATMMKAGVPLVQSFEIVADGQENPKLRDLILALREEVAAGNSFASALSKHPQYFDELFCNLVESGEQSGALETMLDRIAT
YKEKTEKIKAKIKKAMTYPIAVVVVAVIVTGILLVKVVPQFAETFSSFGADLPAFTVFVLNLSEYMQEWWFFILIGIIGF
VFLFKEAVKRSEAFAYQVDKASLKLPIVGDILYNSIIARFARTLSTTFSAGVPLIDALTSVSGATGNMLYKDAVIRVREE
VSTGIQLNTSLRASKMFPAMLIQMTAIGEESGALDDMLDKVAEFYEDAVDNMVDNLTSLLEPMIMAVLGILVGGLMIAMY
LPIFQIGQVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=646676 L1F30_RS04880 WP_253360124.1 1102902..1104134(-) (pilC) [Simiduia sp. 21SJ11W-1]
ATGGCAACCGCAAAGGCCTCGGCGCAGGCAAAACCTTCTGTATTTATATATAAAGGTACCGACAAAAAGGGCAGAAAGAT
CTCTGGTGAAATAGACGGTAGTAGTGCAGCCCTTATTAAAGCGCAACTTTTAAAACAAGGCATCAAGGCAACTACTGTAC
GTAAAAAGCCAAAGCCAATGTTTGGCGGTGGCGGCAAAAAAATTCAACCGCAAGACGTAGCCATTTTTACACGGCAAATG
GCGACCATGATGAAAGCCGGCGTGCCCCTTGTACAAAGCTTCGAGATTGTTGCAGACGGGCAGGAAAACCCGAAACTCAG
GGACTTGATTCTAGCTCTGAGGGAGGAGGTAGCCGCGGGTAATAGCTTCGCCAGTGCGCTAAGTAAGCACCCACAATATT
TTGACGAATTATTTTGCAATTTAGTTGAGTCCGGTGAGCAATCTGGCGCACTCGAAACAATGTTAGACAGGATTGCAACC
TACAAAGAAAAAACAGAAAAAATTAAGGCCAAAATTAAAAAAGCCATGACCTACCCCATTGCGGTAGTTGTAGTTGCAGT
GATTGTAACGGGCATTTTGCTTGTAAAAGTCGTACCTCAGTTTGCTGAAACTTTCAGCTCATTCGGCGCAGACCTACCAG
CATTTACGGTTTTCGTGCTTAATCTATCTGAATACATGCAAGAGTGGTGGTTCTTTATTTTAATCGGGATAATTGGCTTT
GTTTTCCTATTTAAAGAAGCGGTTAAGCGCTCTGAGGCCTTCGCATACCAAGTAGATAAAGCATCACTGAAACTGCCAAT
TGTTGGGGACATCCTATATAACTCTATCATTGCGCGTTTTGCGCGCACACTCTCCACAACCTTTTCAGCAGGTGTTCCGC
TTATCGATGCGTTAACCTCGGTATCTGGCGCTACGGGCAACATGCTTTACAAGGATGCAGTAATTAGAGTGCGCGAGGAA
GTGTCTACAGGCATACAGTTAAACACCTCGCTTCGCGCATCAAAAATGTTCCCTGCCATGCTCATTCAAATGACGGCTAT
TGGTGAAGAATCCGGTGCGCTTGATGACATGCTCGACAAAGTTGCCGAATTCTACGAAGATGCCGTAGACAACATGGTAG
ACAACCTCACCTCACTGCTTGAACCAATGATCATGGCGGTGCTAGGCATTTTGGTAGGCGGCCTGATGATTGCGATGTAC
CTGCCAATTTTCCAAATCGGCCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.75

97.561

0.641
  pilC Acinetobacter baylyi ADP1

61.765

99.512

0.615
  pilC Acinetobacter baumannii D1279779

61.139

98.537

0.602
  pilC Legionella pneumophila strain ERS1305867

55.556

96.585

0.537
  pilG Neisseria gonorrhoeae MS11

41.584

98.537

0.41
  pilG Neisseria meningitidis 44/76-A

41.584

98.537

0.41
  pilC Vibrio campbellii strain DS40M4

39.899

96.585

0.385
  pilC Vibrio cholerae strain A1552

38.384

96.585

0.371