Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OG710_RS17650 Genome accession   NZ_CP107834
Coordinates   3952593..3954554 (+) Length   653 a.a.
NCBI ID   WP_330242279.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3947593..3959554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS17640 (OG710_17665) - 3949192..3950763 (+) 1572 WP_330240197.1 NADH-quinone oxidoreductase subunit M -
  OG710_RS17645 (OG710_17670) nuoN 3950760..3952424 (+) 1665 WP_330240198.1 NADH-quinone oxidoreductase subunit NuoN -
  OG710_RS17650 (OG710_17675) recQ 3952593..3954554 (+) 1962 WP_330242279.1 DNA helicase RecQ Machinery gene
  OG710_RS17655 (OG710_17680) fahA 3954568..3955797 (-) 1230 WP_330240199.1 fumarylacetoacetase -
  OG710_RS17660 (OG710_17685) - 3955939..3957933 (-) 1995 WP_330240200.1 CocE/NonD family hydrolase -
  OG710_RS17665 (OG710_17690) - 3957943..3959442 (-) 1500 WP_330240201.1 peptide MFS transporter -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 70617.04 Da        Isoelectric Point: 5.4564

>NTDB_id=646675 OG710_RS17650 WP_330242279.1 3952593..3954554(+) (recQ) [Streptomyces sp. NBC_00525]
MTIDGTTGGAAAAAESEARRTLHRVFGYEAFRGEQEAIVDHVVAGGDAVVLMPTGGGKSLCYQIPALVRRGTGVVISPLI
ALMQDQVDALRALGVRAGFINSTQDFDERRSMEAQFVAGELDLLYLAPERLRLDTTPALLARGEVSVFAIDEAHCVAQWG
HDFRPDYLALSVLGERWPDVPRIALTATATNATHQEITQRLGMPDAKHFVASFDRPNIQYRIVGKADPKKQLLSFLKEEH
TGDAGIVYCLSRASTEKTAEYLCRNGIEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGIDKPDVRFVAHLDLP
KSVEGYYQETGRAGRDGAPSTAWMAYGLQDVVQQRKLIQGGEGDEAFRRRAAAHLDSMLALCETAQCRRAQLLTYFGQEP
AAASCGNCDTCLTPPETWDGTVAAQKLLSAVVRLKRERNQKFGAGQIVDILLGRRTAKVIQFDHDQLSVFGIGEELSEAE
WRGVVRQLLAQGLLAVEGEYGTLVLTEASGAVLGREREVQLRKEPKKPAASRSSSGRGERKPKAAVAADLPETAVPVFEA
LRAWRGAQAKELGLPAYVIFHDATLREIATVRPTTLGELGGISGLGEKKLATYGEAVLEVLSGLAADTPDTPAPAAPAHD
AEFGWDEEPPEYE

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=646675 OG710_RS17650 WP_330242279.1 3952593..3954554(+) (recQ) [Streptomyces sp. NBC_00525]
ATGACCATCGACGGGACCACGGGCGGGGCGGCCGCCGCGGCCGAGAGCGAGGCGCGGCGCACGCTGCACCGCGTCTTCGG
TTACGAGGCGTTCCGCGGCGAGCAGGAGGCGATCGTCGACCACGTGGTGGCCGGTGGGGACGCCGTCGTGCTCATGCCCA
CCGGCGGCGGCAAGTCCCTCTGCTACCAGATCCCGGCCCTGGTCCGGCGCGGCACCGGCGTCGTGATCTCCCCGCTGATC
GCCCTCATGCAGGACCAGGTGGACGCGCTGCGGGCGCTCGGCGTGCGGGCCGGCTTCATCAACTCCACGCAGGACTTCGA
CGAGCGCCGCTCGATGGAGGCCCAGTTCGTCGCCGGCGAGCTGGACCTGCTCTACCTCGCCCCGGAACGGCTGCGCCTCG
ACACCACGCCGGCGCTGCTGGCGCGCGGCGAGGTCTCCGTCTTCGCGATCGACGAGGCGCACTGCGTCGCCCAGTGGGGC
CACGACTTCCGCCCCGACTACCTCGCCCTGTCCGTCCTCGGCGAGCGCTGGCCGGACGTCCCGCGCATCGCCCTGACGGC
CACCGCGACGAACGCCACGCACCAGGAGATCACCCAGCGCCTCGGCATGCCCGACGCGAAGCACTTCGTGGCCAGCTTCG
ACCGGCCCAACATCCAGTACCGCATCGTCGGCAAGGCGGACCCGAAGAAGCAGCTGCTCTCCTTCCTCAAGGAGGAGCAC
ACCGGGGACGCGGGCATCGTCTACTGCCTGTCCCGCGCGTCCACGGAGAAGACCGCCGAGTATCTCTGCCGCAACGGCAT
CGAGGCCGTCCCGTACCACGCGGGGCTCGACGCCGGGACGCGCGCGGCCCACCAGTCCCGCTTCCTGCGCGAGGAGGGCC
TGGTCGTCGTGGCGACGATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTCCGCTTCGTCGCCCACCTGGACCTGCCC
AAGTCCGTCGAGGGCTACTACCAGGAGACCGGCCGGGCCGGCCGTGACGGCGCCCCGTCCACGGCGTGGATGGCGTACGG
CCTCCAGGACGTCGTCCAGCAGCGCAAGCTCATCCAGGGCGGCGAGGGCGACGAGGCCTTCCGCCGCCGGGCCGCCGCCC
ATCTGGACTCGATGCTGGCCCTGTGCGAGACCGCGCAGTGCCGCCGGGCCCAGCTCCTCACGTACTTCGGTCAGGAACCG
GCCGCCGCCTCCTGCGGCAACTGCGACACCTGCCTCACCCCGCCCGAGACCTGGGACGGCACGGTGGCCGCGCAGAAGCT
GCTCTCCGCCGTGGTCCGCCTCAAGCGCGAGCGGAACCAGAAGTTCGGGGCCGGCCAGATCGTCGACATCCTGCTCGGCC
GCCGCACGGCGAAGGTCATCCAGTTCGACCACGACCAGCTCTCGGTGTTCGGCATCGGTGAGGAGCTGAGCGAGGCGGAG
TGGCGCGGTGTGGTCCGCCAGCTCCTCGCCCAGGGCCTCCTGGCCGTCGAGGGCGAGTACGGCACGCTGGTCCTCACGGA
GGCGAGCGGCGCGGTCCTGGGCCGGGAGCGCGAGGTCCAGCTCCGCAAGGAGCCGAAGAAGCCGGCCGCCTCCCGGTCCT
CGTCCGGCCGGGGCGAGCGCAAGCCCAAGGCGGCGGTCGCCGCGGATCTCCCCGAGACGGCCGTCCCGGTCTTCGAGGCC
CTGCGCGCCTGGCGCGGCGCCCAGGCCAAGGAGCTGGGCCTCCCGGCCTATGTGATCTTCCACGACGCGACCCTGCGCGA
GATCGCCACGGTCCGCCCGACGACGCTCGGCGAGCTGGGCGGCATCAGCGGCCTGGGCGAGAAGAAGCTGGCGACGTACG
GCGAAGCGGTGCTGGAGGTGCTGTCCGGCCTCGCCGCGGACACCCCGGACACCCCGGCCCCCGCCGCTCCCGCTCACGAC
GCCGAGTTCGGCTGGGACGAGGAGCCCCCGGAGTACGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(557-621)

RQC domain (RQC)

(414-528)

Helicase conserved C-terminal domain (Helicase_C)

(230-336)

DEAD/DEAH box helicase (DEAD)

(35-192)

RecQ zinc-binding (RecQ_Zn_bind)

(349-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.374

94.181

0.361