Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LZT96_RS04350 Genome accession   NZ_CP090941
Coordinates   937896..938525 (+) Length   209 a.a.
NCBI ID   WP_002473914.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HAF242     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 932896..943525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZT96_RS04320 (LZT96_04320) - 933001..933537 (+) 537 WP_002494124.1 hypothetical protein -
  LZT96_RS04325 (LZT96_04325) - 933688..934674 (-) 987 WP_002494125.1 aromatic acid exporter family protein -
  LZT96_RS04330 (LZT96_04330) map 934848..935603 (+) 756 WP_002498662.1 type I methionyl aminopeptidase -
  LZT96_RS04335 (LZT96_04335) - 935761..936147 (+) 387 WP_001830382.1 hypothetical protein -
  LZT96_RS04340 (LZT96_04340) liaF 936162..936863 (+) 702 WP_002498661.1 cell wall-active antibiotics response protein LiaF -
  LZT96_RS04345 (LZT96_04345) vraS 936860..937906 (+) 1047 WP_001830374.1 sensor histidine kinase Regulator
  LZT96_RS04350 (LZT96_04350) vraR 937896..938525 (+) 630 WP_002473914.1 two-component system response regulator VraR Regulator
  LZT96_RS04355 (LZT96_04355) - 938582..939760 (-) 1179 WP_002498660.1 YihY/virulence factor BrkB family protein -
  LZT96_RS04360 (LZT96_04360) - 940167..940451 (-) 285 WP_002473916.1 YtxH domain-containing protein -
  LZT96_RS04365 (LZT96_04365) - 940459..940923 (-) 465 WP_002498659.1 low molecular weight protein-tyrosine-phosphatase -
  LZT96_RS04370 (LZT96_04370) - 941064..941279 (+) 216 WP_001830421.1 DUF1128 domain-containing protein -
  LZT96_RS04375 (LZT96_04375) - 941281..942522 (+) 1242 WP_002498658.1 aminopeptidase -
  LZT96_RS04380 (LZT96_04380) - 942602..943132 (+) 531 WP_002498657.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23598.22 Da        Isoelectric Point: 4.7218

>NTDB_id=646574 LZT96_RS04350 WP_002473914.1 937896..938525(+) (vraR) [Staphylococcus epidermidis strain HAF242]
MAIKVLFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKEAITKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPQIKVV
MLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=646574 LZT96_RS04350 WP_002473914.1 937896..938525(+) (vraR) [Staphylococcus epidermidis strain HAF242]
GTGGCGATTAAAGTTTTATTTGTTGATGATCATGAAATGGTAAGAATCGGTATTTCAAGCTATCTTTCAACTCAAGAAGA
TATAGAAGTAGTAGGTGAGGGTGCTTCTGGTAAAGAGGCTATCACTAAAGCGCATGAGCTAAAACCAGATTTAATATTAA
TGGATTTACTTATGGACGATATGGATGGTGTAGAAGCAACTACTGAAATTAAAAAAGATTTACCTCAAATTAAAGTAGTC
ATGTTAACAAGCTTTATAGAGGATAAAGAAGTTTATCGTGCACTTGATTCTGGAGTAGATAGTTATATTTTAAAGACAAC
AAGTGCAAGTGATATAGCTGACGCTGTGCGTAAAACGTATGAAGGTGAATCAGTATTTGAACCAGAAGTGTTAGTAAAAA
TGCGCAACCGTATGAAAAAACGTGCCGAGCTTTATGAAATGTTAACAGAAAGAGAAATGGAGATCCTATTACTTATAGCT
AAAGGATACTCTAACCAAGAGATTGCAAGCGCCTCTCATATCACCATCAAAACAGTAAAAACTCATGTAAGTAACATACT
GAGTAAATTAGAAGTTCAAGATCGAACACAAGCAGTAATCTATGCGTTCCAGCATAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

95.215

100

0.952
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373