Detailed information NTG0646573

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHS33_RS12050
• Genome accession: NZ_CP107819
• Coordinates: 2768580..2769866 (-)
• Length: 428 a.a.
• NCBI ID: WP_330330389.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00536
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2763580..2774866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHS33_RS12030 (OHS33_12025)	-	2763586..2766207 (-)	2622	WP_330330385.1	valine--tRNA ligase	-
OHS33_RS12035 (OHS33_12030)	-	2766304..2766978 (+)	675	WP_330330386.1	hypothetical protein	-
OHS33_RS12040 (OHS33_12035)	-	2767095..2768078 (+)	984	WP_330330387.1	hypothetical protein	-
OHS33_RS12045 (OHS33_12040)	-	2768133..2768405 (-)	273	WP_330330388.1	hypothetical protein	-
OHS33_RS12050 (OHS33_12045)	clpX	2768580..2769866 (-)	1287	WP_330330389.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHS33_RS12055 (OHS33_12050)	clpP	2770018..2770692 (-)	675	WP_330330390.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHS33_RS12060 (OHS33_12055)	-	2770783..2771400 (-)	618	WP_053674923.1	ATP-dependent Clp protease proteolytic subunit	-
OHS33_RS12065 (OHS33_12060)	tig	2771722..2773128 (-)	1407	WP_330330391.1	trigger factor	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46934.82 Da
• Isoelectric Point: 4.7778

>NTDB_id=646573 OHS33_RS12050 WP_330330389.1 2768580..2769866(-) (clpX) [Streptomyces sp. NBC_00536]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEASDQFHEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVVT
SEVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=646573 OHS33_RS12050 WP_330330389.1 2768580..2769866(-) (clpX) [Streptomyces sp. NBC_00536]
GTGGCACGCATCGGTGATGGTGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGTCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAGCTCGCCGAGACCT
CCGAGGTCAGGTGGGAGGAACTCCCCAAGCCTCGTGAGATCTACGAGTTCCTGGAGGGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAACTCGCGAAGTCCAACATCCTCCTGCTGGGACCCACGGGTTCCGGCAAGACGCTGCTGGCCCAGA
CGCTCGCGCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACCGAAGCCGGGTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAAGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAATTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGAGCCTTCTCCGGCCTGGAGAAGATCATCGAGTCGCGCGCCGGGGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCGACCAGTTCCACGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCATCACCTCGGTGCACAACCTCGACCGC
GAGGCCCTGCTGCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAAAGGCTGTTCGAACTCGACGGGGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGTGGTCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCGTCACC
TCGGAGGTCGTCCGCTCCAACGTGAACCCCACGCTGGTCCCGCGGATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519