Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG861_RS20765 Genome accession   NZ_CP107811
Coordinates   4628206..4628880 (+) Length   224 a.a.
NCBI ID   WP_308433546.1    Uniprot ID   A0ABQ3EHJ9
Organism   Streptomyces sp. NBC_00539     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4623206..4633880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS20735 (OG861_20735) - 4624402..4624857 (+) 456 WP_329195245.1 HD domain-containing protein -
  OG861_RS20740 (OG861_20740) - 4625024..4625218 (+) 195 WP_136216973.1 hypothetical protein -
  OG861_RS20755 (OG861_20755) tig 4625858..4627252 (+) 1395 WP_329195208.1 trigger factor -
  OG861_RS20760 (OG861_20760) - 4627540..4628157 (+) 618 WP_329195206.1 ATP-dependent Clp protease proteolytic subunit -
  OG861_RS20765 (OG861_20765) clpP 4628206..4628880 (+) 675 WP_308433546.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG861_RS20770 (OG861_20770) clpX 4629034..4630320 (+) 1287 WP_008738998.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG861_RS20775 (OG861_20775) - 4630386..4631312 (-) 927 WP_329195191.1 hypothetical protein -
  OG861_RS20780 (OG861_20780) - 4631406..4631579 (-) 174 WP_330261837.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24535.96 Da        Isoelectric Point: 4.6747

>NTDB_id=646540 OG861_RS20765 WP_308433546.1 4628206..4628880(+) (clpP) [Streptomyces sp. NBC_00539]
MVNTQMHMNNLSPASGLYTGAQVDNRYVIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPSGGTGREQLS
DLEIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQVVSTRKSTAV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=646540 OG861_RS20765 WP_308433546.1 4628206..4628880(+) (clpP) [Streptomyces sp. NBC_00539]
ATGGTGAACACCCAGATGCACATGAACAACCTTTCTCCCGCGAGCGGCCTCTACACCGGCGCTCAGGTGGACAACCGGTA
CGTGATCCCGCGTTTCGTCGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATTGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGTGACATCTCCATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTCGCCGCCGGTACCC
CCGGCAAGCGTCTGGCCCTGCCGAACGCCCGTGTCCTGATCCACCAGCCGTCCGGCGGTACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACTGCCGAGGACGCACTGGCGTACGGCCTGATCGACC
AGGTCGTCTCCACCCGCAAGAGCACCGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.684

84.821

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.929

0.429
  clpP Streptococcus thermophilus LMD-9

45.876

86.607

0.397
  clpP Streptococcus pyogenes JRS4

45.876

86.607

0.397
  clpP Streptococcus pyogenes MGAS315

45.876

86.607

0.397
  clpP Streptococcus thermophilus LMG 18311

45.876

86.607

0.397
  clpP Streptococcus mutans UA159

46.316

84.821

0.393
  clpP Streptococcus pneumoniae Rx1

45.312

85.714

0.388
  clpP Streptococcus pneumoniae D39

45.312

85.714

0.388
  clpP Streptococcus pneumoniae TIGR4

45.312

85.714

0.388
  clpP Streptococcus pneumoniae R6

45.312

85.714

0.388
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

85.268

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375