Detailed information NTG0646541

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG861_RS20770
• Genome accession: NZ_CP107811
• Coordinates: 4629034..4630320 (+)
• Length: 428 a.a.
• NCBI ID: WP_008738998.1
• Uniprot ID: A0ABZ1RP45
• Organism: Streptomyces sp. NBC_00539
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4624034..4635320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG861_RS20735 (OG861_20735)	-	4624402..4624857 (+)	456	WP_329195245.1	HD domain-containing protein	-
OG861_RS20740 (OG861_20740)	-	4625024..4625218 (+)	195	WP_136216973.1	hypothetical protein	-
OG861_RS20755 (OG861_20755)	tig	4625858..4627252 (+)	1395	WP_329195208.1	trigger factor	-
OG861_RS20760 (OG861_20760)	-	4627540..4628157 (+)	618	WP_329195206.1	ATP-dependent Clp protease proteolytic subunit	-
OG861_RS20765 (OG861_20765)	clpP	4628206..4628880 (+)	675	WP_308433546.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG861_RS20770 (OG861_20770)	clpX	4629034..4630320 (+)	1287	WP_008738998.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG861_RS20775 (OG861_20775)	-	4630386..4631312 (-)	927	WP_329195191.1	hypothetical protein	-
OG861_RS20780 (OG861_20780)	-	4631406..4631579 (-)	174	WP_330261837.1	hypothetical protein	-
OG861_RS20785 (OG861_20785)	-	4632147..4634768 (+)	2622	WP_329195188.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46936.88 Da
• Isoelectric Point: 4.7699

>NTDB_id=646541 OG861_RS20770 WP_008738998.1 4629034..4630320(+) (clpX) [Streptomyces sp. NBC_00539]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=646541 OG861_RS20770 WP_008738998.1 4629034..4630320(+) (clpX) [Streptomyces sp. NBC_00539]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTCTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTGGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAACTCGCGAAGTCCAACATCCTGCTGCTCGGCCCCACAGGCTCCGGCAAGACGCTGCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTCCAGCAGGCGC
TCCTCAAGATCCTGGAGGGCACGACGGCCTCCGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGCGGCGACCATCCGCTCGAAGCGGGAGATCGAGGCGAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCGATCGCGGACCAGGCGATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
GCCGATGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCCCGCATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCCTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519