Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG956_RS23550 Genome accession   NZ_CP107796
Coordinates   5388034..5388639 (+) Length   201 a.a.
NCBI ID   WP_330342929.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 5383034..5393639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS23525 (OG956_23510) - 5383113..5384330 (-) 1218 WP_330339970.1 acyltransferase family protein -
  OG956_RS23530 (OG956_23515) - 5384772..5384966 (+) 195 WP_055703542.1 hypothetical protein -
  OG956_RS23545 (OG956_23530) tig 5386307..5387686 (+) 1380 WP_330339971.1 trigger factor -
  OG956_RS23550 (OG956_23535) clpP 5388034..5388639 (+) 606 WP_330342929.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG956_RS23555 (OG956_23540) clpP 5388707..5389372 (+) 666 WP_330339972.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG956_RS23560 (OG956_23545) clpX 5389543..5390829 (+) 1287 WP_225100891.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG956_RS23565 (OG956_23550) - 5390898..5391866 (-) 969 WP_330339973.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21384.31 Da        Isoelectric Point: 4.6648

>NTDB_id=646362 OG956_RS23550 WP_330342929.1 5388034..5388639(+) (clpP) [Streptomyces sp. NBC_00557]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQQVDDDIANKITAQMLLLAADPNKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIAMGMAASMGQFLLTGGTAGKRFALPHADIMMHQGSAGLGGTVSDIKIQAEYLMRTKKRMSELTAFHSGQTVE
TIIRDGDRDRWFTPEEAKEYGLIDEIITHASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=646362 OG956_RS23550 WP_330342929.1 5388034..5388639(+) (clpP) [Streptomyces sp. NBC_00557]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCAGGTTGACGACGACATCGCCAACAAGATCACGGCCCAGATGCTGCTCCTGGCCGCCGACCCGA
ACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGTTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGGTGGCACCGCGGG
CAAGCGCTTCGCCCTCCCGCACGCGGACATCATGATGCACCAGGGCTCCGCCGGCCTCGGCGGCACGGTCTCGGACATCA
AGATCCAGGCCGAGTACCTGATGCGCACCAAGAAGCGCATGTCGGAGCTGACCGCGTTCCACTCCGGCCAGACGGTCGAG
ACGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCCCGGAGGAGGCCAAGGAGTACGGTCTCATTGACGAGATCAT
CACGCACGCCTCGGGTGTTCCGGGAGGCGGCGGCACCGGTGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

50

93.532

0.468
  clpP Bacillus subtilis subsp. subtilis str. 168

54.335

86.07

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.468

93.532

0.463
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.73

92.04

0.458
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus mutans UA159

50.286

87.065

0.438
  clpP Streptococcus pyogenes MGAS315

50.867

86.07

0.438
  clpP Streptococcus pyogenes JRS4

50.867

86.07

0.438