Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG734_RS32460 Genome accession   NZ_CP107780
Coordinates   7444498..7445196 (+) Length   232 a.a.
NCBI ID   WP_330290988.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7439498..7450196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS32430 (OG734_32470) - 7440470..7440970 (+) 501 WP_330290986.1 HD domain-containing protein -
  OG734_RS32435 (OG734_32475) - 7441167..7441361 (+) 195 WP_006383514.1 hypothetical protein -
  OG734_RS32450 (OG734_32490) tig 7442002..7443396 (+) 1395 WP_330290987.1 trigger factor -
  OG734_RS32455 (OG734_32495) clpP 7443830..7444447 (+) 618 WP_330293871.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG734_RS32460 (OG734_32500) clpP 7444498..7445196 (+) 699 WP_330290988.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG734_RS32465 (OG734_32505) clpX 7445380..7446666 (+) 1287 WP_330290989.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG734_RS32470 (OG734_32510) - 7446740..7447723 (-) 984 WP_330290990.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25667.10 Da        Isoelectric Point: 4.7373

>NTDB_id=646056 OG734_RS32460 WP_330290988.1 7444498..7445196(+) (clpP) [Streptomyces sp. NBC_00576]
MNDFPGSGLYDRTRAAQAAQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLC
LESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETG
RGQVSDLEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=646056 OG734_RS32460 WP_330290988.1 7444498..7445196(+) (clpP) [Streptomyces sp. NBC_00576]
GTGAACGACTTCCCCGGTAGCGGCCTCTACGACCGTACGAGGGCGGCTCAGGCCGCCCAGGCGGAGTACACCGGCCCCCG
CGCCGAATCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGC
TCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGC
CTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACTGCGAT
TTACGACACGATGCAGTTCGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCATCCGCCGCCGCGATCCTCC
TGGCGGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGC
CGCGGGCAGGTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTGCCCAGCTGGAGGACATGCTGGCCAG
GCACTCCACCACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGT
ACGGCCTGATCGACCAGATCATTTCCACCCGGAAGATGAACAACGCCAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(43-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

81.897

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

81.034

0.405
  clpP Streptococcus mutans UA159

45.729

85.776

0.392
  clpP Streptococcus thermophilus LMD-9

46.667

84.052

0.392
  clpP Streptococcus thermophilus LMG 18311

46.667

84.052

0.392
  clpP Streptococcus pneumoniae D39

44.898

84.483

0.379
  clpP Streptococcus pneumoniae R6

44.898

84.483

0.379
  clpP Streptococcus pneumoniae TIGR4

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

84.483

0.379
  clpP Streptococcus pneumoniae Rx1

44.898

84.483

0.379
  clpP Streptococcus pyogenes MGAS315

45.128

84.052

0.379
  clpP Streptococcus pyogenes JRS4

45.128

84.052

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

84.483

0.371