Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG852_RS32240 Genome accession   NZ_CP107772
Coordinates   7113857..7114537 (+) Length   226 a.a.
NCBI ID   WP_133911623.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7108857..7119537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS32215 (OG852_32225) - 7109995..7110189 (+) 195 WP_030779494.1 hypothetical protein -
  OG852_RS32230 (OG852_32240) tig 7110802..7112214 (+) 1413 WP_330349802.1 trigger factor -
  OG852_RS32235 (OG852_32245) - 7112497..7113105 (+) 609 WP_030967072.1 ATP-dependent Clp protease proteolytic subunit -
  OG852_RS32240 (OG852_32250) clpP 7113857..7114537 (+) 681 WP_133911623.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG852_RS32245 (OG852_32255) clpX 7114718..7116007 (+) 1290 WP_133911624.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG852_RS32250 (OG852_32260) - 7116134..7117081 (-) 948 WP_330349803.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25057.50 Da        Isoelectric Point: 4.7304

>NTDB_id=645974 OG852_RS32240 WP_133911623.1 7113857..7114537(+) (clpP) [Streptomyces sp. NBC_00582]
MNDFPGSGLYARTAAEYTGPRAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNSSLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=645974 OG852_RS32240 WP_133911623.1 7113857..7114537(+) (clpP) [Streptomyces sp. NBC_00582]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGGCGGCCGAGTACACCGGCCCCCGCGCCGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGGTCTACATCAACAGCCCCGGCGGTTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCAGTT
CGTCAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCGGCCGGTACGCCGG
GCAAGCGCATGGCCCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGTGAGACCGGCCGTGGTCAGGTCTCCGAC
CTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTTCGCAGCTCGAGGAGATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACAGCTCTCTGCGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Lactococcus lactis subsp. cremoris KW2

45.05

89.381

0.403
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.059

89.381

0.394
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385