Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   L1A16_RS04160 Genome accession   NZ_CP090885
Coordinates   830384..831034 (+) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825384..836034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS04130 (L1A16_04130) - 825867..826082 (+) 216 WP_001232082.1 YozE family protein -
  L1A16_RS04135 (L1A16_04135) - 826168..827136 (+) 969 WP_000658183.1 PhoH family protein -
  L1A16_RS04140 (L1A16_04140) - 827329..827829 (+) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  L1A16_RS04145 (L1A16_04145) - 827832..828158 (+) 327 Protein_827 TfoX/Sxy family protein -
  L1A16_RS04150 (L1A16_04150) ald 828459..829570 (-) 1112 Protein_828 alanine dehydrogenase -
  L1A16_RS04155 (L1A16_04155) - 829747..830316 (+) 570 WP_000443747.1 GNAT family N-acetyltransferase -
  L1A16_RS04160 (L1A16_04160) comEA/celA/cilE 830384..831034 (+) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  L1A16_RS04165 (L1A16_04165) comEC/celB 831018..833258 (+) 2241 WP_000942395.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1A16_RS04170 (L1A16_04170) - 833437..833625 (+) 189 WP_001809102.1 hypothetical protein -
  L1A16_RS04175 (L1A16_04175) - 833657..834244 (+) 588 WP_000933542.1 ABC transporter ATP-binding protein -
  L1A16_RS04180 (L1A16_04180) - 834248..835429 (+) 1182 WP_000655956.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=645824 L1A16_RS04160 WP_000387330.1 830384..831034(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain ND6401]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=645824 L1A16_RS04160 WP_000387330.1 830384..831034(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain ND6401]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(151-214)

SLBB domain (SLBB)

(76-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.