Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OHN38_RS05130 Genome accession   NZ_CP107765
Coordinates   1100202..1102568 (+) Length   788 a.a.
NCBI ID   WP_330281374.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095202..1107568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS05110 (OHN38_05115) - 1095977..1096573 (+) 597 WP_330281370.1 NAD(P)H-dependent oxidoreductase -
  OHN38_RS05115 (OHN38_05120) - 1096592..1097182 (-) 591 WP_330281371.1 TetR/AcrR family transcriptional regulator -
  OHN38_RS05120 (OHN38_05125) - 1097327..1098346 (+) 1020 WP_330281372.1 NAD-dependent epimerase/dehydratase family protein -
  OHN38_RS05125 (OHN38_05130) - 1098472..1100136 (+) 1665 WP_330281373.1 protein kinase -
  OHN38_RS05130 (OHN38_05135) uvrA 1100202..1102568 (+) 2367 WP_330281374.1 excinuclease ABC subunit UvrA Machinery gene
  OHN38_RS05135 (OHN38_05140) - 1102599..1103117 (-) 519 WP_330281375.1 adenylate kinase -
  OHN38_RS05140 (OHN38_05145) - 1103164..1104339 (-) 1176 WP_330285200.1 alanine--tRNA ligase-related protein -
  OHN38_RS05145 (OHN38_05150) - 1104640..1105386 (+) 747 WP_330281376.1 MBL fold metallo-hydrolase -
  OHN38_RS05150 (OHN38_05155) - 1105397..1106206 (-) 810 WP_330281377.1 lysophospholipid acyltransferase family protein -
  OHN38_RS05155 (OHN38_05160) - 1106206..1106976 (-) 771 WP_016431064.1 GNAT family N-acyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 84125.25 Da        Isoelectric Point: 6.5440

>NTDB_id=645825 OHN38_RS05130 WP_330281374.1 1100202..1102568(+) (uvrA) [Streptomyces sp. NBC_00588]
MAGPREPYKADPHDPYVRVRGAREHNLKGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQ
VGAPKVGEITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGDYPPGAERLDSDAFSPNTAAGACPECHGLGE
VHRTTEELLVPDPSLSIRDGAIAAWPGAWQGKNLRDILDALGHDVDRPWRELPAGERQWILFTDEQPVVTVHPVRDADRI
QRPYQGTYMSAHRYVMKTFSDSKSPTLRAKAERFLSSAPCPVCHGSRLRPEAMAVTFAGRTIAELAALPVKDLASALDAT
SEAARVLTEDLNSRIAPILELGLGYLSLDRPTPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLE
RLKAAGNSVFVVEHHLDVVRGADWVVDVGPRAGEHGGEVLHSGPVAELASVAESATAHHLFGRAPAEVRQVRAARGQLKV
GPVTRHNLHGVVAEFPLGVFTAVTGVSGSGKSTLIGEIGEDLAGVERLVSVDQKPIGRTPRSNLATYTGLFDVVRKVFAA
TDGARERGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPETLEVTYRERNIAQVLDLTVESAA
DFFADTPAVARALATLLDVGLGYLRLGQPATELSGGEAQRIKLAGELQRGRRGHTLYLLDEPTTGLHPADVEVLMRQLHG
LVDAGHTVIVVEHDMTVVGDADWVIDLGPGGGDAGGRIVAAGTPVEVARAKGSATAPYLGRVLPPREA

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=645825 OHN38_RS05130 WP_330281374.1 1100202..1102568(+) (uvrA) [Streptomyces sp. NBC_00588]
ATGGCCGGCCCCCGCGAACCGTACAAGGCAGACCCTCACGACCCGTACGTCCGTGTCCGCGGCGCCCGTGAGCACAATCT
CAAGGGTGTGGACGTGGACATCCCCCGGGATGTGCTGGCCGTGTTCACCGGGGTGTCCGGGTCGGGGAAGTCGTCGCTCG
CCTTCGGGACGATCTATGCCGAGGCGCAGCGCCGGTACTTCGAGTCGGTCGCTCCGTACGCGCGCCGGCTGATCCATCAG
GTCGGGGCGCCGAAGGTCGGGGAGATCACCGGACTGCCGCCCGCGGTCTCCCTGCAGCAGCGGCGCTCGGCGCCGACGTC
TCGCTCGTCGGTCGGCACGGTCACCAATCTCTCCAACTCCCTGCGGATGCTCTTCTCCCGCGCGGGCGACTACCCGCCCG
GCGCCGAGCGTCTGGACTCGGACGCCTTCTCCCCCAACACCGCCGCCGGGGCCTGCCCCGAGTGCCACGGGCTGGGTGAG
GTCCACCGTACGACCGAGGAGTTGCTGGTCCCCGACCCGTCCCTGTCGATCCGGGACGGAGCGATCGCCGCGTGGCCGGG
CGCCTGGCAGGGCAAGAACCTCCGCGACATCCTCGACGCGCTCGGCCACGACGTCGACCGCCCCTGGCGCGAACTGCCCG
CCGGGGAGCGGCAATGGATCCTGTTCACCGACGAACAGCCGGTCGTCACAGTGCACCCGGTGCGCGACGCGGACCGCATC
CAACGGCCGTACCAGGGCACGTACATGAGCGCCCACCGGTATGTCATGAAGACGTTCTCCGACTCCAAGAGCCCCACGCT
GCGCGCCAAGGCGGAGCGCTTTCTGAGCAGCGCGCCCTGCCCGGTGTGCCACGGCAGCAGGCTGCGTCCGGAGGCGATGG
CGGTGACCTTCGCGGGCCGCACGATCGCCGAGCTGGCGGCGCTCCCGGTCAAGGACCTCGCCTCCGCACTCGACGCCACA
TCCGAGGCCGCCCGCGTCCTCACCGAGGATCTGAACTCCCGTATCGCACCGATCCTCGAACTCGGCCTCGGCTACCTCAG
CCTGGACCGCCCGACCCCCACCCTCTCGGCGGGCGAACTGCAGCGCCTGCGCCTCGCGACACAGCTGCGCTCCGGGCTCT
TCGGTGTCGTCTACGTCCTCGACGAGCCGTCCGCGGGACTGCACCCGGCGGACACCGAGGCCCTGCTCACGGTCCTGGAG
CGGCTGAAGGCGGCGGGCAACTCGGTGTTCGTGGTCGAGCACCACCTCGATGTCGTCCGCGGCGCCGACTGGGTGGTGGA
CGTCGGCCCACGCGCCGGCGAGCACGGCGGCGAGGTGCTGCACAGCGGCCCGGTGGCGGAGCTGGCGTCGGTGGCCGAAT
CCGCCACGGCCCACCACCTCTTCGGCCGCGCACCCGCGGAGGTACGCCAAGTGCGCGCCGCCCGCGGCCAGTTGAAGGTC
GGCCCGGTCACCCGGCACAACCTGCACGGGGTCGTCGCCGAGTTCCCGCTGGGCGTGTTCACCGCGGTCACCGGTGTGTC
CGGCTCGGGCAAGTCCACCCTCATCGGGGAGATCGGCGAGGACCTGGCCGGTGTGGAGCGGCTGGTCTCGGTCGACCAGA
AGCCCATCGGCCGTACCCCGCGCTCCAACCTGGCCACGTACACGGGCCTGTTCGACGTCGTGCGCAAGGTGTTCGCGGCG
ACCGACGGGGCGCGCGAGCGCGGTTACGGCGTCGGCCGCTTCTCCTTCAACGTCGCCGGGGGGCGCTGCGAGACCTGCCA
GGGCGAGGGGTTCGTCAGCGTGGAGCTGCTGTTCCTGCCGAGCACCTACGCCCCGTGCCCGGACTGCGGCGGGGCCCGCT
ACAACCCCGAGACCCTTGAAGTGACCTACCGGGAACGGAACATCGCGCAGGTGCTGGACCTGACGGTGGAGAGCGCGGCG
GACTTCTTCGCGGACACCCCGGCGGTCGCCCGCGCCCTGGCCACCCTCCTCGACGTGGGCCTCGGCTATCTCCGGCTGGG
CCAGCCCGCCACCGAGCTCTCCGGCGGCGAGGCGCAGCGCATCAAGCTCGCGGGTGAGCTGCAGCGCGGCCGCCGCGGAC
ACACCCTGTATCTCCTCGACGAGCCGACCACCGGCCTCCACCCGGCCGACGTCGAGGTGCTGATGCGCCAGCTGCACGGT
CTCGTCGACGCGGGCCACACCGTGATCGTCGTCGAGCACGACATGACGGTCGTGGGGGACGCGGACTGGGTGATCGACCT
GGGCCCGGGCGGCGGCGACGCGGGCGGGCGCATCGTGGCGGCGGGGACGCCGGTGGAAGTGGCGCGGGCCAAGGGCAGCG
CTACGGCGCCGTATCTGGGCCGGGTGCTGCCACCGCGGGAGGCGTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(167-273)

ABC transporter (ABC_tran)

(490-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.51

86.041

0.374
  uvrA Streptococcus pneumoniae TIGR4

43.51

86.041

0.374
  uvrA Streptococcus pneumoniae D39

43.51

86.041

0.374