Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0992_RS13300 Genome accession   NZ_CP090854
Coordinates   3060707..3061936 (+) Length   409 a.a.
NCBI ID   WP_373948808.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055707..3066936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS13280 (L0992_13280) ampD 3056713..3057313 (-) 601 Protein_2562 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L0992_RS13285 (L0992_13285) nadC 3057397..3058287 (+) 891 WP_373948802.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L0992_RS13290 (L0992_13290) - 3058542..3059006 (+) 465 WP_373948804.1 pilin -
  L0992_RS13295 (L0992_13295) pilB 3059006..3060691 (+) 1686 WP_373948806.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0992_RS13300 (L0992_13300) pilC 3060707..3061936 (+) 1230 WP_373948808.1 type II secretion system F family protein Machinery gene
  L0992_RS13305 (L0992_13305) pilD 3062004..3062873 (+) 870 WP_373948810.1 A24 family peptidase Machinery gene
  L0992_RS13310 (L0992_13310) coaE 3062876..3063490 (+) 615 WP_373948812.1 dephospho-CoA kinase -
  L0992_RS13315 (L0992_13315) zapD 3063517..3064257 (+) 741 WP_017629805.1 cell division protein ZapD -
  L0992_RS13320 (L0992_13320) yacG 3064338..3064535 (+) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  L0992_RS13325 (L0992_13325) rplS 3064955..3065308 (-) 354 WP_004738151.1 50S ribosomal protein L19 -
  L0992_RS13330 (L0992_13330) trmD 3065368..3066108 (-) 741 WP_017629426.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L0992_RS13335 (L0992_13335) rimM 3066136..3066690 (-) 555 WP_017629425.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45250.31 Da        Isoelectric Point: 10.2135

>NTDB_id=645260 L0992_RS13300 WP_373948808.1 3060707..3061936(+) (pilC) [Vibrio pomeroyi strain YSX02]
MSRKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISALTRLTHRVKPKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLHLSHWMQAYSFYAAVGIGFIAL
LVHQLCQRSYSIRLSASRLGLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=645260 L0992_RS13300 WP_373948808.1 3060707..3061936(+) (pilC) [Vibrio pomeroyi strain YSX02]
ATGAGCAGGAAGTCCAAGCAATCACAACTAAAAAGCTATCATTGGAAAGGCATTAATAGCTCAGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTCACCGAACTAGAGGTGCGAGAAAAGCTCAAAGATCAGCACATTCAAATCAAGAAAATCAAAAAGA
AAAGCATCTCTGCACTGACTCGTTTAACACATCGCGTAAAACCCAAAGACATCACTATTTTAACTCGACAGCTTGCGACT
ATGTTGGCCACTGGAGTCCCTATCGTACAGGCTATCAAGTTAGTCTCAGACAACCATCGCAAAGCTGAGATGAAATCTAT
CTTGTCGCATATCTGTAAAGGTGTAGAAGCAGGCACTCCCATATCAAAAGCGATGCGAACCGCAAGCCGTCACTTTGATG
ATCTGTATACCGACTTAGTTGCGACAGGAGAACTCTCTGGAAACCTAGCGCAAGTATTTGAACGATTGGCGACATACCGT
GAAAAAAGTGAGCAACTAAAATCTAAAGTTATAAAGGCTCTCATCTACCCAGCAATGGTTGTTGCGGTCGCCCTTACCGT
TTCCTACTTAATGCTAACCATGGTCATCCCGGAATTTGAATCGATGTTTTCAGGGTTTGGCGCCGATCTCCCTTGGTTTA
CCCAACAAGTTCTTCATCTTTCTCATTGGATGCAGGCTTACAGTTTTTATGCCGCTGTGGGCATTGGATTTATAGCGCTA
TTGGTCCATCAACTGTGTCAGCGCTCTTACTCGATTCGATTATCAGCCAGCCGTTTAGGGTTACGATTTCCGGTGCTTGG
TGGTGTGATGGCCAAAGCCTCTATTGCCAAATTCAGCCGAACCTTATCAACCAGTTTTAGTTCTGGTATTCCGATTCTCA
TGAGCCTTAAAACCACCGCCAAAACCGCAGGCAATTTGCATTATGAATCGGCGATCATTGAGGTTCACCGTGAAACAGCT
GCAGGTATGCCAATGTATATCGCGATGCGTAATACCAATGCCTTCCCCGAGATGGTGTTGCAAATGGTGATGATTGGGGA
GGAGTCAGGAAACCTTGACGACATGCTTAATAAAGTGGCCTCGATTTACGAGTTTGAAGTAGACAACACCGTCGATAATC
TGGGCAAGATCCTAGAGCCATTGATCATCGTATTTTTGGGGACTGTTGTTGGCGGGCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.5

97.8

0.787
  pilC Vibrio campbellii strain DS40M4

73.775

99.756

0.736
  pilC Acinetobacter baylyi ADP1

41.872

99.267

0.416
  pilC Acinetobacter baumannii D1279779

41.832

98.778

0.413
  pilC Legionella pneumophila strain ERS1305867

41.814

97.066

0.406
  pilC Pseudomonas stutzeri DSM 10701

41.162

96.822

0.399
  pilG Neisseria meningitidis 44/76-A

39.558

99.511

0.394
  pilG Neisseria gonorrhoeae MS11

40.351

97.555

0.394