Detailed information NTG0645261

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0992_RS13305
• Genome accession: NZ_CP090854
• Coordinates: 3062004..3062873 (+)
• Length: 289 a.a.
• NCBI ID: WP_373948810.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain YSX02
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3057004..3067873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS13285 (L0992_13285)	nadC	3057397..3058287 (+)	891	WP_373948802.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L0992_RS13290 (L0992_13290)	-	3058542..3059006 (+)	465	WP_373948804.1	pilin	-
L0992_RS13295 (L0992_13295)	pilB	3059006..3060691 (+)	1686	WP_373948806.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L0992_RS13300 (L0992_13300)	pilC	3060707..3061936 (+)	1230	WP_373948808.1	type II secretion system F family protein	Machinery gene
L0992_RS13305 (L0992_13305)	pilD	3062004..3062873 (+)	870	WP_373948810.1	A24 family peptidase	Machinery gene
L0992_RS13310 (L0992_13310)	coaE	3062876..3063490 (+)	615	WP_373948812.1	dephospho-CoA kinase	-
L0992_RS13315 (L0992_13315)	zapD	3063517..3064257 (+)	741	WP_017629805.1	cell division protein ZapD	-
L0992_RS13320 (L0992_13320)	yacG	3064338..3064535 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
L0992_RS13325 (L0992_13325)	rplS	3064955..3065308 (-)	354	WP_004738151.1	50S ribosomal protein L19	-
L0992_RS13330 (L0992_13330)	trmD	3065368..3066108 (-)	741	WP_017629426.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
L0992_RS13335 (L0992_13335)	rimM	3066136..3066690 (-)	555	WP_017629425.1	ribosome maturation factor RimM	-
L0992_RS13340 (L0992_13340)	rpsP	3066715..3066963 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32552.81 Da
• Isoelectric Point: 6.9291

>NTDB_id=645261 L0992_RS13305 WP_373948810.1 3062004..3062873(+) (pilD) [Vibrio pomeroyi strain YSX02]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCETQLRII
DNIPVLSWLFLKGKCHSCANPISVRYPLVELLTAILCTVVASHFGFGFYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYLTSVLGM

Nucleotide

• Length: 870 bp

>NTDB_id=645261 L0992_RS13305 WP_373948810.1 3062004..3062873(+) (pilD) [Vibrio pomeroyi strain YSX02]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATTGGCAGCTTCCTCAA
CGTCGTCATACACCGCTTACCGATTATGATGGAACGTGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATACAAAA
TTCCGGCACCGGAAGGGAAATTTAACCTGAGCATTCCACGTTCGACTTGTCCGAAATGTGAAACCCAATTAAGAATCATC
GATAATATCCCAGTATTAAGCTGGTTGTTCTTAAAGGGTAAATGTCACAGTTGTGCGAATCCAATCAGTGTTCGCTACCC
TTTGGTTGAACTGCTTACTGCAATCCTTTGTACCGTAGTCGCGAGCCACTTTGGTTTTGGTTTCTACGCTATTGCTCTGA
TCTTTTTCACCTTCGCACTCATTACGGCGACCTTTATCGATCTCGACACCATGCTACTGCCTGATCAAATCACCTTACCT
TTGGTTTGGTCTGGTATTGCCTTAGCTCTGTTTAATATCAGCCCAGTATCGCTTCAAGACTCTGTGATTGGCGCAATGGC
AGGCTACCTAGCTCTATGGTCGGTTTACTGGTTGTTTAAACTGCTCACTGGCAAAGAAGGCATGGGTTACGGCGATTTCA
AGCTGTTAGCGGCACTTGGCGCATGGCTGGGTTGGCAGCATCTACCAATGATCATCCTTTTATCGTCGCTTGTTGGTTTG
GTTTTCGGTTTGATTCAGCTGCGCTTGAAACAGCAAGGCATAGATAAAGCCTTTCCATTTGGACCTTATCTTGCCATCGC
AGGTTGGGTTAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTAACTTCTGTACTAGGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.685	92.388	0.478
pilD	Acinetobacter baumannii D1279779	51.311	92.388	0.474
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443