Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L0992_RS04630 Genome accession   NZ_CP090854
Coordinates   1030540..1030839 (+) Length   99 a.a.
NCBI ID   WP_373950224.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025540..1035839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS04620 (L0992_04610) - 1027919..1028191 (+) 273 WP_004736083.1 HU family DNA-binding protein -
  L0992_RS04625 (L0992_04615) ppiD 1028411..1030276 (+) 1866 WP_372384529.1 peptidylprolyl isomerase -
  L0992_RS04630 (L0992_04620) comEA 1030540..1030839 (+) 300 WP_373950224.1 ComEA family DNA-binding protein Machinery gene
  L0992_RS04635 (L0992_04625) rrtA 1030830..1031378 (-) 549 WP_373950226.1 rhombosortase -
  L0992_RS04640 (L0992_04630) - 1031388..1031987 (+) 600 WP_373950228.1 tRNA-uridine aminocarboxypropyltransferase -
  L0992_RS04645 (L0992_04635) - 1032014..1033357 (-) 1344 WP_373950230.1 anti-phage deoxyguanosine triphosphatase -
  L0992_RS04650 (L0992_04640) yfbR 1033413..1033997 (-) 585 WP_017631686.1 5'-deoxynucleotidase -
  L0992_RS04655 (L0992_04645) - 1034166..1035401 (-) 1236 WP_026084153.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10822.38 Da        Isoelectric Point: 4.4944

>NTDB_id=645249 L0992_RS04630 WP_373950224.1 1030540..1030839(+) (comEA) [Vibrio pomeroyi strain YSX02]
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAKEIVDYREKNGEFSSADSLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=645249 L0992_RS04630 WP_373950224.1 1030540..1030839(+) (comEA) [Vibrio pomeroyi strain YSX02]
ATGCGCACGATATACTCAACATTACTTCTTTCATTTCTGATGCTTTTAAGCCCTGCCGTGTTTGCAGATAGCCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATCACGGTAAACATCAATACAGCGACAGCAGAAGAGCTATCAGCACTATTGGTGG
GTGTGGGTGACAAGAAAGCGAAAGAGATCGTCGATTACAGAGAGAAGAACGGAGAATTCTCATCCGCAGACAGCTTGGTT
AACGTGAAAGGGATAGGTGAGGCTACGGTTGAGAAGAACCGTGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

55.67

97.98

0.545
  comEA Vibrio cholerae strain A1552

55.67

97.98

0.545
  comEA Vibrio parahaemolyticus RIMD 2210633

54.255

94.949

0.515
  comEA Vibrio campbellii strain DS40M4

54.348

92.929

0.505
  comEA Acinetobacter baumannii strain A118

33.846

100

0.444
  comE1/comEA Haemophilus influenzae Rd KW20

38.739

100

0.434
  comEA Acinetobacter baylyi ADP1

47.561

82.828

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

61.667

60.606

0.374