Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0993_RS11790 Genome accession   NZ_CP090845
Coordinates   2685804..2687033 (+) Length   409 a.a.
NCBI ID   WP_373937774.1    Uniprot ID   -
Organism   Vibrio kanaloae strain WXL161     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680804..2692033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0993_RS11770 (L0993_11765) ampD 2681849..2682449 (-) 601 Protein_2266 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L0993_RS11775 (L0993_11770) nadC 2682533..2683423 (+) 891 WP_077680840.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L0993_RS11780 (L0993_11775) - 2683680..2684102 (+) 423 WP_373937771.1 pilin -
  L0993_RS11785 (L0993_11780) pilB 2684103..2685788 (+) 1686 WP_373937773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0993_RS11790 (L0993_11785) pilC 2685804..2687033 (+) 1230 WP_373937774.1 type II secretion system F family protein Machinery gene
  L0993_RS11795 (L0993_11790) pilD 2687101..2687970 (+) 870 WP_373937775.1 A24 family peptidase Machinery gene
  L0993_RS11800 (L0993_11795) coaE 2687973..2688587 (+) 615 WP_060468586.1 dephospho-CoA kinase -
  L0993_RS11805 (L0993_11800) zapD 2688614..2689354 (+) 741 WP_029627015.1 cell division protein ZapD -
  L0993_RS11810 (L0993_11805) yacG 2689435..2689632 (+) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  L0993_RS11815 (L0993_11810) rplS 2689858..2690211 (-) 354 WP_017056604.1 50S ribosomal protein L19 -
  L0993_RS11820 (L0993_11815) trmD 2690271..2691011 (-) 741 WP_017056603.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L0993_RS11825 (L0993_11820) rimM 2691038..2691592 (-) 555 WP_017056602.1 ribosome maturation factor RimM -
  L0993_RS11830 (L0993_11825) rpsP 2691617..2691865 (-) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45404.54 Da        Isoelectric Point: 10.1674

>NTDB_id=645172 L0993_RS11790 WP_373937774.1 2685804..2687033(+) (pilC) [Vibrio kanaloae strain WXL161]
MSIQPKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLNEQHIQIKKIKKKNISAITRLTHRVKAKDITILTRQLAT
MLTTGVPIVQAIKLVSDNHRKAEMKSILSHICKGIEAGTPISRAMRTASSHFDELYTDLVATGELSGNLAQVFDRLATYR
EKSEQLRSKVIKALIYPAMVVLVALSVSYLMLTVVIPEFESMFAGFGADLPWFTQQVLQLSHWMQAYSLYALIAVIVVMV
SFKLLRKRSYSLRLTTSRLSLKFPILGTVLSKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEVAIGEVHRETA
AGMPMYIAMRNTDVFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=645172 L0993_RS11790 WP_373937774.1 2685804..2687033(+) (pilC) [Vibrio kanaloae strain WXL161]
ATGAGTATTCAGCCCAAACAGTCACAATTAAAAAGCTACCATTGGAAAGGTATAAATAGCTCAGGTAAGAAAGTGTCTGG
CCAAACTTTAGCGTTAACCGAATTGGAAGTGCGAGAGAAACTCAATGAACAGCATATCCAGATAAAAAAAATCAAAAAGA
AAAATATCTCGGCCATTACACGCTTAACGCATCGCGTCAAAGCAAAAGACATCACAATTTTGACTCGCCAACTTGCCACT
ATGCTAACCACTGGTGTGCCTATCGTGCAGGCGATTAAATTGGTATCAGATAACCACCGCAAAGCTGAAATGAAATCTAT
TCTGTCGCATATCTGTAAAGGCATCGAAGCCGGCACTCCTATTTCAAGAGCGATGCGTACGGCCAGCAGCCACTTTGATG
AGCTCTATACCGACTTAGTCGCAACTGGCGAACTTTCAGGTAACCTTGCGCAAGTCTTTGATCGCTTGGCGACATATCGT
GAAAAGAGTGAACAACTCCGCTCAAAAGTCATCAAAGCACTCATTTACCCTGCTATGGTGGTGTTAGTTGCCTTATCGGT
TTCTTACCTAATGCTAACCGTGGTTATTCCAGAATTTGAATCTATGTTTGCAGGTTTTGGCGCTGATCTCCCTTGGTTTA
CCCAGCAAGTTTTGCAGTTATCACATTGGATGCAAGCTTATAGTCTTTACGCTTTGATTGCCGTTATTGTTGTAATGGTT
AGTTTTAAATTACTGCGAAAGCGCTCCTACTCACTCAGATTAACCACCAGCCGACTCAGTTTAAAATTTCCCATACTCGG
TACGGTTCTATCTAAAGCTTCTATCGCCAAATTCAGTCGAACTCTTTCTACTAGTTTCAGTTCAGGTATCCCGATCCTGA
CTAGCCTTAAAACCACAGCAAAAACCGCGGGTAACCTTCATTATGAGGTTGCGATTGGAGAAGTTCACCGTGAAACGGCC
GCAGGTATGCCAATGTATATCGCGATGCGTAATACAGACGTGTTCCCAGAAATGGTGCTACAGATGGTGATGATTGGTGA
GGAATCGGGAAATTTAGACGACATGCTCAACAAAGTTGCGACTATTTATGAATTTGAAGTCGACAATACCGTCGATAACT
TAGGTAAGATTTTGGAACCGCTGATCATTGTCTTTCTGGGCACCGTTGTAGGAGGGCTTGTTGTCGCAATGTACTTACCA
ATCTTTAATCTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

97.8

0.79
  pilC Vibrio campbellii strain DS40M4

74.813

98.044

0.733
  pilC Legionella pneumophila strain ERS1305867

43.358

97.555

0.423
  pilC Acinetobacter baumannii D1279779

42.574

98.778

0.421
  pilC Acinetobacter baylyi ADP1

42.211

97.311

0.411
  pilG Neisseria gonorrhoeae MS11

41.103

97.555

0.401
  pilG Neisseria meningitidis 44/76-A

40.852

97.555

0.399
  pilC Pseudomonas stutzeri DSM 10701

40.657

96.822

0.394