Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L0993_RS09785 Genome accession   NZ_CP090845
Coordinates   2229114..2229413 (-) Length   99 a.a.
NCBI ID   WP_017056943.1    Uniprot ID   A0A2N7JGM2
Organism   Vibrio kanaloae strain WXL161     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2224114..2234413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0993_RS09760 (L0993_09760) - 2224538..2225755 (+) 1218 WP_017056948.1 pyridoxal phosphate-dependent aminotransferase -
  L0993_RS09765 (L0993_09765) yfbR 2225952..2226536 (+) 585 WP_017056947.1 5'-deoxynucleotidase -
  L0993_RS09770 (L0993_09770) - 2226591..2227934 (+) 1344 WP_102506055.1 anti-phage deoxyguanosine triphosphatase -
  L0993_RS09775 (L0993_09775) - 2227966..2228565 (-) 600 WP_077680092.1 tRNA-uridine aminocarboxypropyltransferase -
  L0993_RS09780 (L0993_09780) rrtA 2228575..2229123 (+) 549 WP_017056944.1 rhombosortase -
  L0993_RS09785 (L0993_09785) comEA 2229114..2229413 (-) 300 WP_017056943.1 ComEA family DNA-binding protein Machinery gene
  L0993_RS09790 (L0993_09790) ppiD 2229622..2231487 (-) 1866 WP_373937577.1 peptidylprolyl isomerase -
  L0993_RS09795 (L0993_09795) - 2231706..2231978 (-) 273 WP_004736083.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10709.12 Da        Isoelectric Point: 4.2092

>NTDB_id=645166 L0993_RS09785 WP_017056943.1 2229114..2229413(-) (comEA) [Vibrio kanaloae strain WXL161]
MRTIYSTLLLSFLITLSSAAFADSPTKAELYEGIEITVNINTATAEELSALLVGVGDKKAQDIVDYRDQNGAFATADDLV
SVKGIGEVTVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=645166 L0993_RS09785 WP_017056943.1 2229114..2229413(-) (comEA) [Vibrio kanaloae strain WXL161]
ATGCGCACAATATATTCAACACTACTTCTTTCATTTCTTATTACCCTTAGCTCCGCAGCGTTTGCAGACAGCCCAACTAA
GGCTGAGCTTTACGAAGGTATTGAGATAACGGTAAACATCAACACAGCGACAGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTCGGGGACAAGAAAGCCCAAGATATCGTCGATTACAGAGATCAAAATGGTGCGTTTGCGACTGCTGATGATTTGGTG
AGTGTGAAAGGAATCGGTGAAGTGACGGTAGAAAAGAACCGCGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JGM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

57.609

92.929

0.535
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio cholerae C6706

54.639

97.98

0.535
  comEA Vibrio cholerae strain A1552

54.639

97.98

0.535
  comEA Acinetobacter baylyi ADP1

52.439

82.828

0.434
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Legionella pneumophila str. Paris

36.275

100

0.374
  comEA Legionella pneumophila strain ERS1305867

36.275

100

0.374
  comEA Lactococcus lactis subsp. cremoris KW2

44.444

81.818

0.364