Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0990_RS11795 Genome accession   NZ_CP090843
Coordinates   2685793..2687022 (+) Length   409 a.a.
NCBI ID   WP_373937774.1    Uniprot ID   -
Organism   Vibrio kanaloae strain A6-11SW3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680793..2692022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS11775 (L0990_11770) ampD 2681838..2682438 (-) 601 Protein_2267 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L0990_RS11780 (L0990_11775) nadC 2682522..2683412 (+) 891 WP_077680840.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L0990_RS11785 (L0990_11780) - 2683669..2684091 (+) 423 WP_373937771.1 pilin -
  L0990_RS11790 (L0990_11785) pilB 2684092..2685777 (+) 1686 WP_373937773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0990_RS11795 (L0990_11790) pilC 2685793..2687022 (+) 1230 WP_373937774.1 type II secretion system F family protein Machinery gene
  L0990_RS11800 (L0990_11795) pilD 2687090..2687959 (+) 870 WP_373937775.1 A24 family peptidase Machinery gene
  L0990_RS11805 (L0990_11800) coaE 2687962..2688576 (+) 615 WP_060468586.1 dephospho-CoA kinase -
  L0990_RS11810 (L0990_11805) zapD 2688603..2689343 (+) 741 WP_029627015.1 cell division protein ZapD -
  L0990_RS11815 (L0990_11810) yacG 2689424..2689621 (+) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  L0990_RS11820 (L0990_11815) rplS 2689847..2690200 (-) 354 WP_017056604.1 50S ribosomal protein L19 -
  L0990_RS11825 (L0990_11820) trmD 2690260..2691000 (-) 741 WP_017056603.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L0990_RS11830 (L0990_11825) rimM 2691027..2691581 (-) 555 WP_017056602.1 ribosome maturation factor RimM -
  L0990_RS11835 (L0990_11830) rpsP 2691606..2691854 (-) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45404.54 Da        Isoelectric Point: 10.1674

>NTDB_id=645128 L0990_RS11795 WP_373937774.1 2685793..2687022(+) (pilC) [Vibrio kanaloae strain A6-11SW3]
MSIQPKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLNEQHIQIKKIKKKNISAITRLTHRVKAKDITILTRQLAT
MLTTGVPIVQAIKLVSDNHRKAEMKSILSHICKGIEAGTPISRAMRTASSHFDELYTDLVATGELSGNLAQVFDRLATYR
EKSEQLRSKVIKALIYPAMVVLVALSVSYLMLTVVIPEFESMFAGFGADLPWFTQQVLQLSHWMQAYSLYALIAVIVVMV
SFKLLRKRSYSLRLTTSRLSLKFPILGTVLSKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEVAIGEVHRETA
AGMPMYIAMRNTDVFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=645128 L0990_RS11795 WP_373937774.1 2685793..2687022(+) (pilC) [Vibrio kanaloae strain A6-11SW3]
ATGAGTATTCAGCCCAAACAGTCACAATTAAAAAGCTACCATTGGAAAGGTATAAATAGCTCAGGTAAGAAAGTGTCTGG
CCAAACTTTAGCGTTAACCGAATTGGAAGTGCGAGAGAAACTCAATGAACAGCATATCCAGATAAAAAAAATCAAAAAGA
AAAATATCTCGGCCATTACACGCTTAACGCATCGCGTCAAAGCAAAAGACATCACAATTTTGACTCGCCAACTTGCCACT
ATGCTAACCACTGGTGTGCCTATCGTGCAGGCGATTAAATTGGTATCAGATAACCACCGCAAAGCTGAAATGAAATCTAT
TCTGTCGCATATCTGTAAAGGCATCGAAGCCGGCACTCCTATTTCAAGAGCGATGCGTACGGCCAGCAGCCACTTTGATG
AGCTCTATACCGACTTAGTCGCAACTGGCGAACTTTCAGGTAACCTTGCGCAAGTCTTTGATCGCTTGGCGACATATCGT
GAAAAGAGTGAACAACTCCGCTCAAAAGTCATCAAAGCACTCATTTACCCTGCTATGGTGGTGTTAGTTGCCTTATCGGT
TTCTTACCTAATGCTAACCGTGGTTATTCCAGAATTTGAATCTATGTTTGCAGGTTTTGGCGCTGATCTCCCTTGGTTTA
CCCAGCAAGTTTTGCAGTTATCACATTGGATGCAAGCTTATAGTCTTTACGCTTTGATTGCCGTTATTGTTGTAATGGTT
AGTTTTAAATTACTGCGAAAGCGCTCCTACTCACTCAGATTAACCACCAGCCGACTCAGTTTAAAATTTCCCATACTCGG
TACGGTTCTATCTAAAGCTTCTATCGCCAAATTCAGTCGAACTCTTTCTACTAGTTTCAGTTCAGGTATCCCGATCCTGA
CTAGCCTTAAAACCACAGCAAAAACCGCGGGTAACCTTCATTATGAGGTTGCGATTGGAGAAGTTCACCGTGAAACGGCC
GCAGGTATGCCAATGTATATCGCGATGCGTAATACAGACGTGTTCCCAGAAATGGTGCTACAGATGGTGATGATTGGTGA
GGAATCGGGAAATTTAGACGACATGCTCAACAAAGTTGCGACTATTTATGAATTTGAAGTCGACAATACCGTCGATAACT
TAGGTAAGATTTTGGAACCGCTGATCATTGTCTTTCTGGGCACCGTTGTAGGAGGGCTTGTTGTCGCAATGTACTTACCA
ATCTTTAATCTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

97.8

0.79
  pilC Vibrio campbellii strain DS40M4

74.813

98.044

0.733
  pilC Legionella pneumophila strain ERS1305867

43.358

97.555

0.423
  pilC Acinetobacter baumannii D1279779

42.574

98.778

0.421
  pilC Acinetobacter baylyi ADP1

42.211

97.311

0.411
  pilG Neisseria gonorrhoeae MS11

41.103

97.555

0.401
  pilG Neisseria meningitidis 44/76-A

40.852

97.555

0.399
  pilC Pseudomonas stutzeri DSM 10701

40.657

96.822

0.394