Detailed information NTG0645129

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0990_RS11800
• Genome accession: NZ_CP090843
• Coordinates: 2687090..2687959 (+)
• Length: 289 a.a.
• NCBI ID: WP_373937775.1
• Uniprot ID: -
• Organism: Vibrio kanaloae strain A6-11SW3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2682090..2692959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0990_RS11780 (L0990_11775)	nadC	2682522..2683412 (+)	891	WP_077680840.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L0990_RS11785 (L0990_11780)	-	2683669..2684091 (+)	423	WP_373937771.1	pilin	-
L0990_RS11790 (L0990_11785)	pilB	2684092..2685777 (+)	1686	WP_373937773.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L0990_RS11795 (L0990_11790)	pilC	2685793..2687022 (+)	1230	WP_373937774.1	type II secretion system F family protein	Machinery gene
L0990_RS11800 (L0990_11795)	pilD	2687090..2687959 (+)	870	WP_373937775.1	A24 family peptidase	Machinery gene
L0990_RS11805 (L0990_11800)	coaE	2687962..2688576 (+)	615	WP_060468586.1	dephospho-CoA kinase	-
L0990_RS11810 (L0990_11805)	zapD	2688603..2689343 (+)	741	WP_029627015.1	cell division protein ZapD	-
L0990_RS11815 (L0990_11810)	yacG	2689424..2689621 (+)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
L0990_RS11820 (L0990_11815)	rplS	2689847..2690200 (-)	354	WP_017056604.1	50S ribosomal protein L19	-
L0990_RS11825 (L0990_11820)	trmD	2690260..2691000 (-)	741	WP_017056603.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
L0990_RS11830 (L0990_11825)	rimM	2691027..2691581 (-)	555	WP_017056602.1	ribosome maturation factor RimM	-
L0990_RS11835 (L0990_11830)	rpsP	2691606..2691854 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32583.61 Da
• Isoelectric Point: 5.9782

>NTDB_id=645129 L0990_RS11800 WP_373937775.1 2687090..2687959(+) (pilD) [Vibrio kanaloae strain A6-11SW3]
MEVLHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGEFNLSTPRSTCPKCDTQLRVI
DNIPVLSWLFLKGKCHSCSNPISARYPLVELLTATLCTVVASHFGFSFYAIALIFFTFVLITATFIDLDTMLLPDQITLP
LIWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
IFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLIWGNDIMDWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=645129 L0990_RS11800 WP_373937775.1 2687090..2687959(+) (pilD) [Vibrio kanaloae strain A6-11SW3]
ATGGAAGTACTTCACTACTATCCTTGGCTATTCCCTGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTTCTCAA
CGTTGTAATTCATCGATTACCGATTATGATGGAACGTGAGTGGCAACAAGAGTGCTCCGAATATTTCTCTCAATATAAAA
TTCCAGCACCTGAAGGGGAATTTAATCTTAGCACTCCACGTTCGACTTGCCCGAAATGTGACACCCAATTAAGAGTCATC
GACAATATCCCCGTTTTGAGCTGGTTGTTCTTAAAGGGCAAGTGCCACAGTTGTTCGAATCCAATCAGTGCTCGCTACCC
TTTGGTAGAATTGCTTACTGCAACACTTTGTACCGTGGTGGCGAGTCACTTTGGTTTTAGTTTCTACGCTATTGCGCTGA
TCTTTTTCACCTTCGTATTGATTACAGCGACCTTTATTGATCTCGACACCATGCTGCTCCCTGATCAAATCACCTTACCG
TTAATTTGGTCTGGGATCGCGTTAGCACTTTTTAATATCAGCCCAGTATCGCTTCAAGACTCAGTAGTTGGTGCGATGGC
TGGTTACTTAGCCTTATGGTCTGTCTATTGGCTTTTCAAACTACTCACGGGTAAAGAAGGAATGGGCTATGGTGACTTTA
AATTATTAGCGGCACTTGGGGCATGGCTTGGGTGGCAGCACCTACCAATGATCATTCTTTTATCATCACTCGTCGGCCTT
ATTTTTGGATTGATTCAACTGAGGTTAAAACAACAAGGGATAGATAAAGCTTTCCCATTTGGACCTTACCTCGCCATTGC
TGGTTGGGTAAGCTTGATATGGGGTAACGACATCATGGATTGGTATTTCACATCTGTATTAGGAATTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	69.792	99.654	0.696
pilD	Acinetobacter baumannii D1279779	51.685	92.388	0.478
pilD	Acinetobacter nosocomialis M2	51.685	92.388	0.478
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443