Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LZI70_RS07145 Genome accession   NZ_CP090614
Coordinates   1639441..1640553 (+) Length   370 a.a.
NCBI ID   WP_255229579.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1634441..1645553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS07125 (LZI70_07115) rsmB 1635330..1636610 (-) 1281 WP_255229575.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LZI70_RS07130 (LZI70_07120) fmt 1636699..1637646 (-) 948 WP_255229576.1 methionyl-tRNA formyltransferase -
  LZI70_RS07135 (LZI70_07125) def 1637681..1638196 (-) 516 WP_255229577.1 peptide deformylase -
  LZI70_RS07140 (LZI70_07130) - 1638337..1639431 (+) 1095 WP_255229578.1 LysM peptidoglycan-binding domain-containing protein -
  LZI70_RS07145 (LZI70_07135) dprA 1639441..1640553 (+) 1113 WP_255229579.1 DNA-processing protein DprA Machinery gene
  LZI70_RS07150 (LZI70_07140) - 1640556..1641032 (+) 477 WP_032548670.1 DUF494 family protein -
  LZI70_RS07155 (LZI70_07145) - 1641045..1641611 (+) 567 WP_255229580.1 type I DNA topoisomerase -
  LZI70_RS07160 (LZI70_07150) - 1641660..1642790 (-) 1131 WP_255229581.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LZI70_RS07165 (LZI70_07155) purE 1642796..1643281 (-) 486 WP_032548673.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LZI70_RS07170 (LZI70_07160) - 1643479..1644036 (+) 558 WP_255229582.1 L-threonylcarbamoyladenylate synthase -
  LZI70_RS07175 (LZI70_07165) hemF 1644058..1644975 (+) 918 WP_255229583.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40220.06 Da        Isoelectric Point: 6.8837

>NTDB_id=643991 LZI70_RS07145 WP_255229579.1 1639441..1640553(+) (dprA) [Vibrio pelagius strain WXL662]
MTEQELTAWLRLSFVPKLGMKRLKRLLAIDSPLNIVNYSHEQLQSLGFSDSQITYLRFKIEPLVEECLSWQAKSANHHLV
THQCAAYPPSLRQIASAPSTLFVRGNISTLSDPQIAMVGSRNASLEGLQTAKAFAREFAQSGLIVTSGLALGIDGYAHDG
ALEGGGETFAVLGSGLDAIYPARHRKLAQRIEDQGALISEFRPSAKPRPENFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYALEQGREVFALPGSIHNPTSRGGNSLIKSGACLVQSAQDVLVEIKSLLDWSIEVQPSLFEAPITDNENEQLPFPHLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=643991 LZI70_RS07145 WP_255229579.1 1639441..1640553(+) (dprA) [Vibrio pelagius strain WXL662]
ATGACTGAGCAAGAGTTGACGGCGTGGTTGAGGCTGAGCTTCGTTCCTAAGCTAGGAATGAAGCGCCTTAAACGCTTACT
GGCTATCGACTCTCCACTTAATATTGTTAATTACTCACATGAGCAGCTTCAGTCGCTAGGTTTCTCCGATTCTCAAATTA
CCTATCTTAGATTCAAAATAGAGCCACTGGTTGAAGAGTGCTTATCGTGGCAAGCGAAAAGCGCCAACCATCATCTTGTT
ACTCACCAATGTGCCGCATATCCACCAAGCCTGCGCCAGATAGCCAGCGCACCTAGCACACTGTTTGTGCGCGGTAATAT
ATCGACACTCAGTGACCCTCAAATCGCGATGGTGGGCAGTCGTAACGCCAGCCTAGAAGGACTGCAAACGGCCAAAGCAT
TTGCTCGAGAGTTTGCGCAGAGCGGTTTGATTGTGACTAGTGGCTTAGCGTTGGGTATTGATGGCTATGCGCATGATGGT
GCTTTAGAAGGCGGCGGTGAAACTTTTGCAGTGCTAGGTTCGGGGTTAGATGCTATCTACCCAGCACGCCATCGTAAATT
GGCACAGCGGATCGAAGATCAGGGCGCGCTAATCTCTGAATTTCGCCCTTCGGCTAAACCTCGTCCTGAAAACTTTCCGC
GTCGCAATCGTATTATCAGTGGCTTGTCGCTCGGTACACTGGTGGTCGAAGCGGCGGAAAAGAGTGGTTCATTGATTACG
GCTCGCTACGCATTAGAACAAGGACGAGAAGTCTTTGCTTTGCCTGGTTCAATACATAATCCGACTAGCCGTGGAGGAAA
CAGTTTAATTAAGTCGGGCGCTTGCTTGGTTCAGAGTGCTCAAGATGTGCTTGTTGAAATAAAAAGTCTATTGGATTGGT
CTATTGAAGTACAACCCAGTCTGTTTGAAGCGCCGATAACCGACAATGAAAATGAACAATTGCCATTTCCGCATCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGCGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTCTTAGAGTTAGAACTTTTAGGGCATGTTGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(319-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.952

100

0.665
  dprA Vibrio cholerae strain A1552

58.021

100

0.586
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.478
  dprA Haemophilus influenzae Rd KW20

46.567

90.541

0.422
  dprA Neisseria meningitidis strain C311

38.287

100

0.411
  dprA Neisseria meningitidis MC58

38.287

100

0.411
  dprA Legionella pneumophila strain ERS1305867

49.026

83.243

0.408
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403