Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LQQ45_RS19590 Genome accession   NZ_CP090607
Coordinates   3900508..3901326 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MRSN 58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3895508..3906326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQQ45_RS19575 (LQQ45_19575) pilE 3895727..3896152 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LQQ45_RS19580 (LQQ45_19580) pilY2 3896149..3896631 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LQQ45_RS19585 (LQQ45_19585) pilY1 3896642..3900496 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LQQ45_RS19590 (LQQ45_19590) pilX 3900508..3901326 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LQQ45_RS19595 (LQQ45_19595) pilW 3901323..3902324 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LQQ45_RS19600 (LQQ45_19600) pilV 3902325..3902885 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LQQ45_RS19605 (LQQ45_19605) fimU 3902879..3903352 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LQQ45_RS19610 (LQQ45_19610) ispH 3903522..3904472 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LQQ45_RS19615 (LQQ45_19615) gmk 3904595..3905224 (+) 630 WP_000015937.1 guanylate kinase -
  LQQ45_RS19620 (LQQ45_19620) rpoZ 3905297..3905575 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LQQ45_RS19625 (LQQ45_19625) - 3905614..3905744 (+) 131 Protein_3823 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=643932 LQQ45_RS19590 WP_000149374.1 3900508..3901326(-) (pilX) [Acinetobacter baumannii strain MRSN 58]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=643932 LQQ45_RS19590 WP_000149374.1 3900508..3901326(-) (pilX) [Acinetobacter baumannii strain MRSN 58]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993