Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZ753_RS10285 Genome accession   NZ_CP090514
Coordinates   2270489..2271691 (-) Length   400 a.a.
NCBI ID   WP_011098309.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain Riv13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265489..2276691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ753_RS10265 (LZ753_10265) - 2266710..2267387 (+) 678 WP_010894955.1 response regulator transcription factor -
  LZ753_RS10270 (LZ753_10270) - 2267380..2268717 (+) 1338 WP_004090387.1 HAMP domain-containing sensor histidine kinase -
  LZ753_RS10275 (LZ753_10275) coaE 2268984..2269607 (-) 624 WP_004090385.1 dephospho-CoA kinase -
  LZ753_RS10280 (LZ753_10280) - 2269619..2270482 (-) 864 WP_004084594.1 A24 family peptidase -
  LZ753_RS10285 (LZ753_10285) pilC 2270489..2271691 (-) 1203 WP_011098309.1 type II secretion system F family protein Machinery gene
  LZ753_RS10290 (LZ753_10290) - 2272132..2272578 (+) 447 WP_004090380.1 pilin -
  LZ753_RS10295 (LZ753_10295) - 2272824..2273033 (-) 210 WP_004090377.1 hypothetical protein -
  LZ753_RS10300 (LZ753_10300) - 2273887..2274327 (+) 441 WP_234502188.1 pilin -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44098.02 Da        Isoelectric Point: 10.1299

>NTDB_id=643114 LZ753_RS10285 WP_011098309.1 2270489..2271691(-) (pilC) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=643114 LZ753_RS10285 WP_011098309.1 2270489..2271691(-) (pilC) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGCTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GTGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGGTTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TTATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGTTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTTTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)

Type II secretion system (T2SS), protein F (T2SSF)

(65-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.75

100

0.548
  pilC Legionella pneumophila strain ERS1305867

52.346

100

0.53
  pilC Acinetobacter baylyi ADP1

51.25

100

0.513
  pilC Acinetobacter baumannii D1279779

50.75

100

0.508
  pilG Neisseria gonorrhoeae MS11

43.467

99.5

0.432
  pilG Neisseria meningitidis 44/76-A

42.965

99.5

0.428
  pilC Vibrio cholerae strain A1552

40.943

100

0.413
  pilC Vibrio campbellii strain DS40M4

40.399

100

0.405
  pilC Thermus thermophilus HB27

37.352

100

0.395