Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHC87_RS01950 Genome accession   NZ_CP090501
Coordinates   392303..393529 (-) Length   408 a.a.
NCBI ID   WP_237033349.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain CSP DAM1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387303..398529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC87_RS01925 (IHC87_01925) mutT 389088..389528 (-) 441 WP_237033346.1 8-oxo-dGTP diphosphatase MutT -
  IHC87_RS01930 (IHC87_01930) yacG 389616..389825 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IHC87_RS01935 (IHC87_01935) zapD 389834..390571 (-) 738 WP_005297594.1 cell division protein ZapD -
  IHC87_RS01940 (IHC87_01940) coaE 390639..391241 (-) 603 WP_237033347.1 dephospho-CoA kinase -
  IHC87_RS01945 (IHC87_01945) pilD 391243..392121 (-) 879 WP_237033348.1 prepilin peptidase Machinery gene
  IHC87_RS01950 (IHC87_01950) pilC 392303..393529 (-) 1227 WP_237033349.1 type II secretion system F family protein Machinery gene
  IHC87_RS01955 (IHC87_01955) pilB 393595..395286 (-) 1692 WP_237033350.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHC87_RS01960 (IHC87_01960) pilA 395287..395673 (-) 387 WP_237033351.1 pilin Machinery gene
  IHC87_RS01965 (IHC87_01965) ampD 396068..396646 (+) 579 WP_069531889.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHC87_RS01970 (IHC87_01970) pdhR 397006..397779 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45030.18 Da        Isoelectric Point: 10.0330

>NTDB_id=642968 IHC87_RS01950 WP_237033349.1 392303..393529(-) (pilC) [Photobacterium damselae subsp. damselae strain CSP DAM1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVILKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=642968 IHC87_RS01950 WP_237033349.1 392303..393529(-) (pilC) [Photobacterium damselae subsp. damselae strain CSP DAM1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTCCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGTGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCACTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCGACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGATTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCATACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGAATTCCACTACTAACAG
GGCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATAGAAGAAGCTATTATGGAAGCGCATACCAGTGCAGCAGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCTGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTGATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

41.975

99.265

0.417
  pilG Neisseria gonorrhoeae MS11

41.975

99.265

0.417
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

39.951

100

0.4
  pilC Acinetobacter baylyi ADP1

39.547

97.304

0.385
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373