Detailed information NTG0642478

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LZZ50_RS17400
• Genome accession: NZ_CP090441
• Coordinates: 4130064..4131323 (+)
• Length: 419 a.a.
• NCBI ID: WP_184362404.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola strain YchA
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4125424..4135694	4130064..4131323	within	0

Gene organization within MGE regions

Location: 4125424..4135694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZZ50_RS17380 (LZZ50_17380)	-	4125424..4126950 (-)	1527	WP_342370390.1	hypothetical protein	-
LZZ50_RS17385 (LZZ50_17385)	-	4126920..4127549 (-)	630	WP_245102989.1	hypothetical protein	-
LZZ50_RS17390 (LZZ50_17390)	-	4127560..4129149 (-)	1590	WP_245102991.1	phosphoethanolamine transferase	-
LZZ50_RS17395 (LZZ50_17395)	pilA2	4129285..4129710 (-)	426	WP_054592196.1	pilin	Machinery gene
LZZ50_RS17400 (LZZ50_17400)	pilC	4130064..4131323 (+)	1260	WP_184362404.1	type II secretion system F family protein	Machinery gene
LZZ50_RS17405 (LZZ50_17405)	-	4131330..4132193 (+)	864	WP_016849610.1	A24 family peptidase	-
LZZ50_RS17410 (LZZ50_17410)	coaE	4132207..4132830 (+)	624	WP_184608693.1	dephospho-CoA kinase	-
LZZ50_RS17415 (LZZ50_17415)	-	4132930..4133076 (+)	147	Protein_3410	SymE family type I addiction module toxin	-
LZZ50_RS17420 (LZZ50_17420)	-	4133188..4134522 (-)	1335	WP_016904089.1	HAMP domain-containing sensor histidine kinase	-
LZZ50_RS17425 (LZZ50_17425)	-	4134515..4135192 (-)	678	WP_006448355.1	response regulator transcription factor	-
LZZ50_RS17430 (LZZ50_17430)	-	4135224..4135694 (-)	471	WP_245102993.1	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46071.56 Da
• Isoelectric Point: 10.3006

>NTDB_id=642478 LZZ50_RS17400 WP_184362404.1 4130064..4131323(+) (pilC) [Xanthomonas arboricola strain YchA]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMRKMIGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLVVTVGSIVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=642478 LZZ50_RS17400 WP_184362404.1 4130064..4131323(+) (pilC) [Xanthomonas arboricola strain YchA]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAACATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTTGGAGCGGCGGGGAAGAAAATTACCCCAAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAGAAAAATGATCGGCCAGATCAGGACAGACATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTTGTCCGTGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGATACGGTCGCCACCTACAAAGAAAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCGGTAGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AAAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCTCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTAATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAAGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTCGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGCAAGAAGTCAACAACGCCGTAGACGCGCTCAGTAGCCTGCTCGAGCCACTGATCATGGTATTCATCGGCACTATTGTG
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.788	94.511	0.508
pilC	Acinetobacter baylyi ADP1	51.111	96.659	0.494
pilC	Acinetobacter baumannii D1279779	50.864	96.659	0.492
pilG	Neisseria gonorrhoeae MS11	43.86	95.227	0.418
pilG	Neisseria meningitidis 44/76-A	43.25	95.465	0.413
pilC	Vibrio cholerae strain A1552	40.5	95.465	0.387
pilC	Vibrio campbellii strain DS40M4	38.75	95.465	0.37