Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LY387_RS01265 Genome accession   NZ_CP090438
Coordinates   277296..278945 (+) Length   549 a.a.
NCBI ID   WP_234496033.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272296..283945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS01245 pilM 274532..275509 (+) 978 WP_234495065.1 pilus assembly protein PilM -
  LY387_RS01250 - 275511..276122 (+) 612 WP_234495066.1 PilN domain-containing protein -
  LY387_RS01255 - 276122..276700 (+) 579 WP_234495067.1 type 4a pilus biogenesis protein PilO -
  LY387_RS01260 - 276697..277206 (+) 510 WP_234495068.1 pilus assembly protein PilP -
  LY387_RS01265 pilQ 277296..278945 (+) 1650 WP_234496033.1 type IV pilus secretin PilQ Machinery gene
  LY387_RS01270 aroK 279131..279649 (+) 519 WP_042477283.1 shikimate kinase AroK -
  LY387_RS01275 aroB 279679..280764 (+) 1086 WP_234495069.1 3-dehydroquinate synthase -
  LY387_RS01280 - 280864..282363 (+) 1500 WP_234495070.1 SPOR domain-containing protein -
  LY387_RS01285 - 282522..283346 (+) 825 WP_234495071.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 59364.43 Da        Isoelectric Point: 4.3218

>NTDB_id=642428 LY387_RS01265 WP_234496033.1 277296..278945(+) (pilQ) [Vibrio maritimus strain BH16]
MVNANNLERVSFEVDDKRQGVIVIELSDNAIAVDVAGAEYGLDIMLQQTSVGAEQLSIYDVTDFATLVNTIEVFDEAPHA
RLQVSSTQAVDYQTMVRGNQLRVTVIPLTQEKADEKALGTINKGQLTSINFQDMPVRNVLQLLADYNDFNLVVSDTVQGN
LTLRLDSVPWTDVLDIILRVKGLDKRVKGDVVLVAPKAELDRQEKQALEKNRLTEQIGQLESQIVKIHYANASDVAAMIG
GEGAVSMLSERGSVAIDERTNSLLLRELPSNISVIKSIIAELDVPVKQVQIEARVVTIKEGNVEELGIRWGVSSTNGNTT
IGGSIESNLAAAGIGDGSLEIDDILNVNLPAISDNASSIAFQVASLGSNTLLDLELSALQNESKAEIISSPRLITTNKKS
AYIEQGTEIPYLKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVLKTLEGETVAIDTQRIGTQVLVN
NGETVVLGGIYQHSFSNKIDKVPLLGDIPGLGALFRRTYENIGKNELLIFVTPQIITPTPFVAELGNSL

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=642428 LY387_RS01265 WP_234496033.1 277296..278945(+) (pilQ) [Vibrio maritimus strain BH16]
ATGGTAAATGCCAACAATCTAGAGCGTGTATCCTTTGAGGTGGATGACAAGCGTCAGGGCGTCATTGTTATTGAGTTATC
TGATAACGCTATTGCGGTGGATGTCGCTGGGGCTGAGTATGGTCTCGATATCATGCTCCAACAAACCTCGGTGGGCGCTG
AGCAGCTATCGATCTATGATGTAACCGATTTTGCCACATTGGTGAACACGATAGAGGTATTCGATGAAGCGCCACACGCT
CGCCTTCAAGTTTCCTCAACCCAAGCTGTCGACTATCAAACGATGGTAAGAGGGAATCAACTTCGAGTGACCGTTATTCC
ACTCACTCAAGAAAAAGCCGATGAGAAAGCGCTCGGAACCATCAACAAAGGGCAACTAACCTCGATTAACTTTCAAGATA
TGCCTGTGCGCAACGTGCTTCAGCTTCTTGCCGATTACAACGATTTCAATCTAGTCGTATCCGATACGGTGCAAGGCAAT
CTTACATTGCGATTAGATAGCGTGCCGTGGACAGACGTTCTGGACATTATCTTACGAGTGAAGGGGCTTGATAAGCGAGT
GAAAGGGGACGTAGTGCTAGTCGCTCCCAAGGCTGAGTTAGACAGGCAGGAGAAGCAAGCGCTTGAAAAGAATCGACTGA
CCGAGCAAATAGGGCAGCTCGAGTCGCAGATCGTCAAGATTCACTATGCTAATGCGTCGGATGTCGCTGCCATGATCGGT
GGCGAAGGGGCGGTGAGTATGCTCTCTGAAAGAGGCTCTGTCGCGATTGATGAACGGACCAACTCCCTGCTGTTACGTGA
GTTACCGAGCAACATTAGCGTGATTAAATCGATCATTGCAGAGCTCGATGTACCGGTTAAGCAGGTACAGATTGAAGCGC
GTGTTGTGACGATCAAAGAAGGTAATGTTGAAGAGCTTGGTATTCGTTGGGGTGTCAGTTCGACCAATGGCAATACGACA
ATTGGTGGCTCTATTGAGAGTAACCTGGCCGCTGCGGGTATTGGTGACGGGAGTCTTGAAATCGATGATATTCTGAACGT
AAACCTGCCAGCCATTTCCGACAATGCATCGAGTATCGCCTTTCAAGTGGCGAGTTTGGGTTCAAACACCTTGTTAGACT
TAGAACTCTCGGCACTGCAAAACGAGTCAAAAGCAGAGATCATTTCCAGTCCGAGGCTTATCACCACCAATAAGAAATCC
GCCTACATTGAGCAAGGGACTGAGATCCCATACCTCAAATCCACTTCAAGTGGCGCAACTGCGGTAGAGTTTAAAAAGGC
GGTGCTCTCGCTTACCGTCACCCCACAAATTACGCCGGACAATCGACTCATTTTAGATTTGGACGTTACCCAAGACCGTG
TTGGTGAAGTGCTGAAAACCCTCGAAGGAGAAACGGTCGCAATCGATACTCAACGGATTGGCACCCAAGTATTAGTCAAC
AATGGCGAAACGGTGGTTTTGGGAGGAATTTATCAACATTCCTTTTCAAATAAGATAGATAAAGTGCCGCTTCTCGGTGA
TATTCCGGGTTTAGGTGCATTATTTAGACGAACCTACGAAAATATCGGCAAGAATGAGTTATTAATCTTTGTCACGCCAC
AGATCATTACCCCTACACCCTTCGTGGCTGAGCTTGGTAACTCATTGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(223-288)

Bacterial type II and III secretion system protein (Secretin)

(378-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

65.922

97.814

0.645
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

65.922

97.814

0.645
  pilQ Vibrio campbellii strain DS40M4

64.771

99.271

0.643
  pilQ Legionella pneumophila strain Lp02

41.544

99.089

0.412
  pilQ Legionella pneumophila strain ERS1305867

41.544

99.089

0.412
  pilQ Acinetobacter baumannii strain A118

35.751

100

0.377
  pilQ Acinetobacter baumannii D1279779

35.751

100

0.377
  pilQ Pseudomonas aeruginosa PAK

37.163

100

0.377
  comQ Acinetobacter baylyi ADP1

36.396

100

0.375