Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LY388_RS07795 Genome accession   NZ_CP090387
Coordinates   481482..482708 (-) Length   408 a.a.
NCBI ID   WP_148504744.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476482..487708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS07770 (LY388_07770) parC 476483..478768 (+) 2286 WP_032476645.1 DNA topoisomerase IV subunit A -
  LY388_RS07775 (LY388_07775) yacG 478817..479014 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  LY388_RS07780 (LY388_07780) zapD 479172..479912 (-) 741 WP_000207194.1 cell division protein ZapD -
  LY388_RS07785 (LY388_07785) coaE 479944..480552 (-) 609 WP_000011553.1 dephospho-CoA kinase -
  LY388_RS07790 (LY388_07790) pilD 480549..481424 (-) 876 WP_000418748.1 A24 family peptidase Machinery gene
  LY388_RS07795 (LY388_07795) pilC 481482..482708 (-) 1227 WP_148504744.1 type II secretion system F family protein Machinery gene
  LY388_RS07800 (LY388_07800) pilB 482761..484449 (-) 1689 WP_057563243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LY388_RS07805 (LY388_07805) pilA 484451..484882 (-) 432 WP_057563244.1 pilin Machinery gene
  LY388_RS07810 (LY388_07810) nadC 485127..486017 (-) 891 WP_000665277.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LY388_RS07815 (LY388_07815) ampD 486319..486864 (+) 546 WP_000567314.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LY388_RS07820 (LY388_07820) fldB 487013..487531 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45136.41 Da        Isoelectric Point: 10.3424

>NTDB_id=641918 LY388_RS07795 WP_148504744.1 481482..482708(-) (pilC) [Vibrio cholerae strain GXFL1-4]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEVEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASTHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=641918 LY388_RS07795 WP_148504744.1 481482..482708(-) (pilC) [Vibrio cholerae strain GXFL1-4]
ATGAAAGCGACACAAACTTTACCTCTGAAAAATTATCGCTGGAAAGGCATTAACAGCAACGGCAAAAAAGTCTCCGGCCA
GATGCTCGCCATCTCCGAAGTCGAAGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCTTAACCCATCGTGTGAAAAGCAAAGACATCACGATTTTGACTCGGCAGCTGGCAACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCTCTCAAGTTAGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCAGGCACGCCGCTTTCCAAAGCGATGCGCACCGCCAGCACTCATTTTGATACCT
TGTATGTCGACTTAGTCGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCCAAGGTGATCAAAGCGCTCATCTACCCGAGTATGGTAGTGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCAGAACTGCCTTGGTTTACGC
AGCAAGTACTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCTATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCCTTTCAAATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACTACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGACGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.265

100

0.993
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4