Detailed information NTG0641256

Bioinformatically predicted

Overview

• Name: cinA
• Type: Machinery gene
• Locus tag: LVJ09_RS09170
• Genome accession: NZ_CP090216
• Coordinates: 1906084..1907337 (-)
• Length: 417 a.a.
• NCBI ID: WP_274981610.1
• Uniprot ID: -
• Organism: Vagococcus lutrae strain VF20
• Function: facilitate localization of RecA (predicted from homology) Homologous recombination

Genomic Context

Location: 1901084..1912337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ09_RS09145 (LVJ09_09135)	-	1901229..1901429 (-)	201	WP_023605866.1	cold-shock protein	-
LVJ09_RS09150 (LVJ09_09140)	-	1901605..1902144 (-)	540	WP_274981609.1	HdeD family acid-resistance protein	-
LVJ09_RS09155 (LVJ09_09145)	-	1902167..1903030 (-)	864	WP_126762878.1	alpha/beta fold hydrolase	-
LVJ09_RS09160 (LVJ09_09150)	rny	1903182..1904741 (-)	1560	WP_126762880.1	ribonuclease Y	-
LVJ09_RS09165 (LVJ09_09155)	recA	1904961..1905998 (-)	1038	WP_023605862.1	recombinase RecA	Machinery gene
LVJ09_RS09170 (LVJ09_09160)	cinA	1906084..1907337 (-)	1254	WP_274981610.1	competence/damage-inducible protein A	Machinery gene
LVJ09_RS09175 (LVJ09_09165)	pgsA	1907477..1908055 (-)	579	WP_248848410.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LVJ09_RS09180 (LVJ09_09170)	-	1908079..1908927 (-)	849	WP_274981611.1	helix-turn-helix domain-containing protein	-
LVJ09_RS09185 (LVJ09_09175)	ymfI	1908952..1909677 (-)	726	WP_023605858.1	elongation factor P 5-aminopentanone reductase	-
LVJ09_RS09190 (LVJ09_09180)	yfmH	1909680..1910981 (-)	1302	WP_274981612.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LVJ09_RS09195 (LVJ09_09185)	yfmF	1910971..1912242 (-)	1272	WP_274981613.1	EF-P 5-aminopentanol modification-associated protein YfmF	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45887.06 Da
• Isoelectric Point: 4.5922

>NTDB_id=641256 LVJ09_RS09170 WP_274981610.1 1906084..1907337(-) (cinA) [Vagococcus lutrae strain VF20]
MRAEIIAVGTELLIGQVVNTNATFLSEELVGIGYDIYYHSVVGDNPERLKELIGQASQRSELIVLCGGLGPTEDDLTRDV
LADYLKEPMVLDPEGYDKIDTYMTRSGREMTENNRRQALTIQGGQAIPNDTGLAVGTFYQAETTSYLVLPGPPRELKPMF
YHHVIPLLKQQLPQTDQLYSRVLRFFGIGESQLVLELETLIHEQTNPTIAPYAGDTEVRLRLTVKATDETTANEMLDEME
EKIMSQVGDYFYGYGEENSLIKETVKALKAAKRTVASAESLTAGMFMSALGDVPGVSSVFNGGFVTYTNEMKRCLLKIDS
ALLAQHGAVSEACACAMAEQARVLTKSDYGVALTGVAGPDKSEGEPVGSVWIGLSSASSGTQAYHFQLQRDRQYIRQSAM
MRAMDLLRRQVIAENHD

Nucleotide

• Length: 1254 bp

>NTDB_id=641256 LVJ09_RS09170 WP_274981610.1 1906084..1907337(-) (cinA) [Vagococcus lutrae strain VF20]
ATGCGAGCAGAAATTATCGCAGTGGGTACGGAGCTATTAATTGGTCAAGTGGTTAATACCAATGCGACTTTTTTATCAGA
AGAATTAGTGGGGATTGGTTATGATATTTATTATCACAGTGTGGTAGGGGATAACCCAGAGCGTTTAAAAGAGCTAATTG
GACAAGCCTCTCAGCGAAGTGAATTGATTGTATTGTGTGGGGGATTAGGACCAACAGAAGATGATTTAACGCGAGATGTG
TTAGCTGATTATTTAAAGGAGCCGATGGTGTTAGATCCAGAGGGTTACGATAAGATTGATACCTATATGACACGCTCTGG
TCGCGAGATGACAGAAAATAATCGTAGGCAAGCGTTAACGATTCAAGGAGGTCAAGCGATACCGAATGATACAGGTTTAG
CAGTCGGGACTTTTTATCAAGCTGAGACGACGAGTTATTTAGTCTTACCAGGACCGCCGCGTGAGTTGAAACCGATGTTT
TATCATCATGTTATTCCATTGTTAAAGCAGCAGTTACCTCAAACCGACCAACTGTATTCTCGCGTATTACGCTTTTTTGG
TATCGGGGAGTCACAGTTAGTTTTAGAATTAGAAACATTAATTCACGAGCAAACCAATCCGACCATTGCGCCATACGCAG
GTGATACAGAAGTTCGTTTACGACTGACAGTCAAAGCAACAGATGAGACAACAGCAAATGAGATGCTAGATGAGATGGAA
GAAAAAATTATGTCTCAAGTGGGAGATTACTTCTATGGTTATGGGGAAGAAAATAGTTTGATTAAAGAAACTGTCAAGGC
CTTAAAAGCCGCGAAGCGAACGGTCGCTTCGGCCGAAAGTTTGACTGCCGGAATGTTTATGAGTGCATTGGGAGACGTTC
CCGGTGTTTCTAGTGTCTTTAATGGTGGCTTTGTCACATATACGAATGAGATGAAACGTTGCTTATTAAAGATTGATTCC
GCTTTGCTTGCTCAACACGGGGCTGTTAGTGAGGCGTGTGCGTGTGCGATGGCAGAACAGGCTCGTGTGTTAACAAAGAG
TGATTATGGCGTAGCATTAACAGGCGTAGCAGGTCCAGATAAAAGTGAGGGTGAGCCTGTAGGAAGTGTGTGGATTGGGC
TCTCTTCTGCGTCAAGTGGGACACAGGCTTATCATTTTCAACTTCAGCGAGACCGTCAATATATTCGGCAAAGTGCCATG
ATGCGCGCAATGGACTTATTACGTCGTCAAGTGATAGCAGAAAATCACGACTAA

Domains

Predicted by InterproScan.

• Probable molybdopterin binding domain (MoCF_biosynth) (5-169)

• Damage-inducible protein CinA KH domain (CinA_KH) (180-253)

• Competence-damaged protein (CinA) (259-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cinA	Streptococcus pneumoniae TIGR4	50.118	100	0.508
cinA	Streptococcus pneumoniae R6	49.645	100	0.504
cinA	Streptococcus pneumoniae Rx1	49.645	100	0.504
cinA	Streptococcus mitis NCTC 12261	49.409	100	0.501
cinA	Streptococcus mitis SK321	49.409	100	0.501
cinA	Streptococcus pneumoniae D39	49.409	100	0.501
cinA	Streptococcus mutans UA159	48.449	100	0.487
cinA	Bacillus subtilis subsp. subtilis str. 168	46.324	97.842	0.453
cinA	Streptococcus suis isolate S10	42.822	98.561	0.422