Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LXF01_RS01665 Genome accession   NZ_CP090067
Coordinates   350956..351339 (+) Length   127 a.a.
NCBI ID   WP_326489497.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345956..356339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01625 (LXF01_01625) - 347590..347949 (+) 360 WP_233944951.1 hypothetical protein -
  LXF01_RS01630 (LXF01_01630) tfpZ 348022..348756 (-) 735 WP_233944952.1 TfpX/TfpZ family type IV pilin accessory protein -
  LXF01_RS01635 (LXF01_01635) - 348822..349286 (-) 465 WP_326489495.1 pilin -
  LXF01_RS01645 (LXF01_01645) pilE 349476..350003 (-) 528 WP_326489496.1 pilin Machinery gene
  LXF01_RS01655 (LXF01_01655) - 350542..350712 (+) 171 WP_178895792.1 hypothetical protein -
  LXF01_RS01665 (LXF01_01665) pilA2 350956..351339 (+) 384 WP_326489497.1 pilin Machinery gene
  LXF01_RS01670 (LXF01_01670) - 351402..355037 (+) 3636 WP_233944953.1 fused MFS/spermidine synthase -
  LXF01_RS01675 (LXF01_01675) bfr 355128..355592 (-) 465 WP_180049188.1 bacterioferritin -
  LXF01_RS01680 (LXF01_01680) - 355850..356044 (-) 195 WP_078192519.1 bacterioferritin-associated ferredoxin -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 12603.46 Da        Isoelectric Point: 6.1229

>NTDB_id=640536 LXF01_RS01665 WP_326489497.1 350956..351339(+) (pilA2) [Acinetobacter sp. SH20PTE14]
MIVVAIIGILAAIAIPAYQDYTARAKMAEVIAQAAPAKLAVAETASSLGALSGVTSTNTGYDFPGATDFVSGVTIAAGGV
ITVNSTVPNASGELLLTPSGTTGNLKWVCSSPSTGGISAKFLPTNCR

Nucleotide


Download         Length: 384 bp        

>NTDB_id=640536 LXF01_RS01665 WP_326489497.1 350956..351339(+) (pilA2) [Acinetobacter sp. SH20PTE14]
ATGATCGTTGTTGCAATTATCGGTATTCTTGCTGCAATTGCGATTCCAGCTTATCAAGATTACACAGCACGTGCGAAAAT
GGCTGAGGTTATTGCTCAAGCCGCTCCAGCAAAATTAGCTGTAGCAGAAACGGCAAGTTCTTTAGGTGCTTTATCTGGTG
TTACATCTACGAACACTGGCTATGATTTCCCTGGGGCTACTGACTTCGTTAGTGGTGTTACGATTGCTGCTGGAGGTGTG
ATTACTGTTAACTCTACAGTACCTAATGCATCTGGCGAACTTCTTCTTACACCAAGTGGCACCACAGGCAATTTAAAATG
GGTTTGTTCTAGTCCTTCTACTGGTGGAATTTCAGCGAAGTTTTTACCAACCAATTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(23-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

49.219

100

0.496
  pilA2 Legionella pneumophila str. Paris

49.219

100

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

38.562

100

0.465
  pilE Neisseria gonorrhoeae MS11

37.748

100

0.449
  pilE Neisseria gonorrhoeae strain FA1090

36.601

100

0.441
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.85

100

0.417
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.692

100

0.386