Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LXF01_RS01645 Genome accession   NZ_CP090067
Coordinates   349476..350003 (-) Length   175 a.a.
NCBI ID   WP_326489496.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344476..355003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01620 (LXF01_01620) - 345529..347586 (+) 2058 WP_233944950.1 hypothetical protein -
  LXF01_RS01625 (LXF01_01625) - 347590..347949 (+) 360 WP_233944951.1 hypothetical protein -
  LXF01_RS01630 (LXF01_01630) tfpZ 348022..348756 (-) 735 WP_233944952.1 TfpX/TfpZ family type IV pilin accessory protein -
  LXF01_RS01635 (LXF01_01635) - 348822..349286 (-) 465 WP_326489495.1 pilin -
  LXF01_RS01645 (LXF01_01645) pilE 349476..350003 (-) 528 WP_326489496.1 pilin Machinery gene
  LXF01_RS01655 (LXF01_01655) - 350542..350712 (+) 171 WP_178895792.1 hypothetical protein -
  LXF01_RS01665 (LXF01_01665) pilA2 350956..351339 (+) 384 WP_326489497.1 pilin Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17604.06 Da        Isoelectric Point: 6.2688

>NTDB_id=640535 LXF01_RS01645 WP_326489496.1 349476..350003(-) (pilE) [Acinetobacter sp. SH20PTE14]
MKSVQQGFTLIELMIVVAIIGILAAVAIPAYQDYTVRTKISEVLTAAASPKSLISEAFQSDSLVGAQAAAAEYNARPAAE
KTSKYVGGIAIDATTAVITVTTAAAATSGLPTDAAAKNVNFSPNVNGVALAAGATGAVDWACTSSTATTATTRALASRAI
PADPLPAKYAPSECR

Nucleotide


Download         Length: 528 bp        

>NTDB_id=640535 LXF01_RS01645 WP_326489496.1 349476..350003(-) (pilE) [Acinetobacter sp. SH20PTE14]
ATGAAATCAGTTCAACAGGGCTTCACGCTCATCGAGCTTATGATTGTGGTCGCTATTATCGGTATTTTGGCTGCAGTAGC
GATTCCTGCTTATCAAGACTATACTGTACGTACTAAAATTTCTGAAGTATTAACTGCTGCAGCATCTCCAAAAAGCTTAA
TCAGCGAAGCTTTCCAAAGTGATAGTTTGGTTGGTGCACAAGCAGCGGCTGCGGAATATAATGCACGTCCAGCCGCAGAA
AAGACAAGTAAATATGTTGGTGGTATTGCTATAGATGCAACTACAGCCGTAATTACTGTGACGACCGCAGCAGCGGCAAC
TTCTGGTTTACCAACGGATGCAGCTGCTAAAAATGTAAACTTTTCACCTAACGTGAATGGAGTTGCTTTAGCTGCAGGAG
CAACTGGTGCGGTTGATTGGGCCTGCACGAGTTCTACAGCTACTACTGCGACTACACGTGCATTAGCTAGTAGAGCAATA
CCTGCTGATCCATTACCTGCAAAATATGCACCTTCTGAGTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-175)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

48.404

100

0.52
  pilA Ralstonia pseudosolanacearum GMI1000

41.848

100

0.44
  pilA2 Legionella pneumophila str. Paris

42.69

97.714

0.417
  pilA2 Legionella pneumophila strain ERS1305867

42.69

97.714

0.417
  comP Acinetobacter baylyi ADP1

38.983

100

0.394